Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 18, Issue 4

1227 -- 1229Dong-Qing Wei, Aman Chandra Kaushik, Gurudeeban Selvaraj, Yi Pan 0001. Editorial: Computational Genomics and Molecular Medicine for Emerging COVID-19
1230 -- 1233Chunmei Cui, Chuanbo Huang, Wanlu Zhou, Xiangwen Ji, Fenghong Zhang, Liang Wang, Yuan Zhou, Qinghua Cui. AGTR2, One Possible Novel Key Gene for the Entry of SARS-CoV-2 Into Human Cells
1234 -- 1241Yadunath Pathak, Piyush Kumar Shukla, K. V. Arya. Deep Bidirectional Classification Model for COVID-19 Disease Infected Patients
1242 -- 1249Jin-Xiong Lv, Shikui Tu, Lei Xu 0001. Detection of Phenotype-Related Mutations of COVID-19 via the Whole Genomic Data
1250 -- 1261Ming Xiao, Guangdi Liu, Jianghang Xie, Zichun Dai, Zihao Wei, Ziyao Ren, Jun Yu, Le Zhang 0004. 2019nCoVAS: Developing the Web Service for Epidemic Transmission Prediction, Genome Analysis, and Psychological Stress Assessment for 2019-nCoV
1262 -- 1270Chandrabose Selvaraj, Dhurvas Chandrasekaran Dinesh, Umesh Panwar, Evzen Boura, Sanjeev Kumar Singh. High-Throughput Screening and Quantum Mechanics for Identifying Potent Inhibitors Against Mac1 Domain of SARS-CoV-2 Nsp3
1271 -- 1280Broto Chakrabarty, Dibyajyoti Das, Gopalakrishnan Bulusu, Arijit Roy. Network-Based Analysis of Fatal Comorbidities of COVID-19 and Potential Therapeutics
1281 -- 1289Elmeri M. Jokinen, Krishnasamy Gopinath, Sami T. Kurkinen, Olli T. Pentikäinen. Detection of Binding Sites on SARS-CoV-2 Spike Protein Receptor-Binding Domain by Molecular Dynamics Simulations in Mixed Solvents
1290 -- 1298Deshan Zhou, Shaoliang Peng, Dong-Qing Wei, Wu Zhong, Yutao Dou, Xiaolan Xie. LUNAR : Drug Screening for Novel Coronavirus Based on Representation Learning Graph Convolutional Network
1299 -- 1304Aman Chandra Kaushik, Aamir Mehmood, Gurudeeban Selvaraj, Xiaofeng Dai, Yi Pan 0001, Dong-Qing Wei. CoronaPep: An Anti-Coronavirus Peptide Generation Tool
1305 -- 1314Zhimiao Yu, Jiarui Lu, Yuan Jin, Yang Yang 0030. KenDTI: An Ensemble Model for Predicting Drug-Target Interaction by Integrating Multi-Source Information
1315 -- 1324Shanshan Hu, DeNan Xia, Benyue Su, Peng Chen 0001, Bing Wang 0004, Jin-Yan Li 0001. A Convolutional Neural Network System to Discriminate Drug-Target Interactions
1325 -- 1335Enze Liu, Jin Li, Garrett Kinnebrew, Pengyue Zhang, Yan Zhang 0032, Lijun Cheng, Lang Li 0001. A Fast and Furious Bayesian Network and Its Application of Identifying Colon Cancer to Liver Metastasis Gene Regulatory Networks
1336 -- 1349Hector Carrillo-Cabada, Jeremy Benson, Asghar M. Razavi, Brianna Mulligan, Michel A. Cuendet, Harel Weinstein, Michela Taufer, Trilce Estrada. A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes
1350 -- 1360Aiying Zhang, Jian Fang 0001, Wenxing Hu, Vince D. Calhoun, Yu-Ping Wang 0002. A Latent Gaussian Copula Model for Mixed Data Analysis in Brain Imaging Genetics
1361 -- 1368Ulavappa B. Angadi, Krishna Kumar Chaturvedi, Sudhir Srivastava, Anil Rai. A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning Approach
1369 -- 1383Liguang Wang, Yujia Wang, Yi Fu, Yunge Gao, Jiawei Du, Chen Yang, Jianxiao Liu. AFSBN: A Method of Artificial Fish Swarm Optimizing Bayesian Network for Epistasis Detection
1384 -- 1395Ziying Yang, Guoxian Yu, Maozu Guo 0001, Jiantao Yu, Xiangliang Zhang 0001, Jun Wang 0035. CDPath: Cooperative Driver Pathways Discovery Using Integer Linear Programming and Markov Clustering
1396 -- 1404Bing Nan Li, Xinle Wang, Rong Wang 0001, Teng Zhou, Rongke Gao, Edward J. Ciaccio, Peter H. R. Green. Celiac Disease Detection From Videocapsule Endoscopy Images Using Strip Principal Component Analysis
1405 -- 1415Yan Ge, Philipp Rosendahl, Claudio Durán, Nicole Töpfner, Sara Ciucci, Jochen R. Guck, Carlo Vittorio Cannistraci. Cell Mechanics Based Computational Classification of Red Blood Cells Via Machine Intelligence Applied to Morpho-Rheological Markers
1416 -- 1425Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li 0001. ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition
1426 -- 1438Sidharth Maheshwari, Venkateshwarlu Y. Gudur, Rishad Shafik, Ian Wilson, Alex Yakovlev, Amit Acharyya. CORAL: Verification-Aware OpenCL Based Read Mapper for Heterogeneous Systems
1439 -- 1450Yingwen Zhao, Jun Wang 0035, Maozu Guo 0001, Xiangliang Zhang 0001, Guoxian Yu. Cross-Species Protein Function Prediction with Asynchronous-Random Walk
1451 -- 1463Jun Zhang, Qingcai Chen, Bin Liu 0014. DeepDRBP-2L: A New Genome Annotation Predictor for Identifying DNA-Binding Proteins and RNA-Binding Proteins Using Convolutional Neural Network and Long Short-Term Memory
1464 -- 1473Shaoliang Peng, Yaning Yang, Wei Liu, Fei Li, Xiangke Liao. Discriminant Projection Shared Dictionary Learning for Classification of Tumors Using Gene Expression Data
1474 -- 1480Furkan Ozden, Metin Can Siper, Necmi Acarsoy, Tugrulcan Elmas, Bryan Marty, Xinjian Qi, A. Ercument Cicek. DORMAN: Database of Reconstructed MetAbolic Networks
1481 -- 1491Yue Hu, Jin-Xing Liu, Ying-Lian Gao, Junliang Shang. DSTPCA: Double-Sparse Constrained Tensor Principal Component Analysis Method for Feature Selection
1492 -- 1503Xingyu Liao, Min Li 0007, Junwei Luo, You Zou, Fang-Xiang Wu, Yi Pan 0001, Feng Luo, Jianxin Wang 0001. EPGA-SC : A Framework for de novo Assembly of Single-Cell Sequencing Reads
1504 -- 1511Afsaneh Javadi, Faezeh Keighobadi, Vahab Nekoukar, Marzieh Ebrahimi. Finite-Set Model Predictive Control of Melanoma Cancer Treatment Using Signaling Pathway Inhibitor of Cancer Stem Cell
1512 -- 1523Chao Wang 0003, Lei Gong, Shiming Lei, Haijie Fang, Xi Li 0003, Aili Wang 0003, Xuehai Zhou. GenSeq+: A Scalable High-Performance Accelerator for Genome Sequencing
1524 -- 1534Gaurav Sharma, Prashant Singh Rana, Seema Bawa. Hybrid Machine Learning Models for Predicting Types of Human T-cell Lymphotropic Virus
1535 -- 1548Methun Kamruzzaman, Ananth Kalyanaraman, Bala Krishnamoorthy, Stefan Hey, Patrick S. Schnable. Hyppo-X: A Scalable Exploratory Framework for Analyzing Complex Phenomics Data
1549 -- 1561Meiling Wang, Wei Shao 0005, Xiaoke Hao, Li Shen 0001, Daoqiang Zhang. Identify Consistent Cross-Modality Imaging Genetic Patterns via Discriminant Sparse Canonical Correlation Analysis
1562 -- 1571Pingjian Ding, Cheng Liang, Wenjue Ouyang, Guanghui Li 0003, Qiu Xiao, Jiawei Luo. Inferring Synergistic Drug Combinations Based on Symmetric Meta-Path in a Novel Heterogeneous Network
1572 -- 1581Lei Deng 0002, Wenkai Li, Jingpu Zhang. LDAH2V: Exploring Meta-Paths Across Multiple Networks for lncRNA-Disease Association Prediction
1582 -- 1595Ling Huang, Chang-Dong Wang, Hongyang Chao. oComm: Overlapping Community Detection in Multi-View Brain Network
1596 -- 1607Konstantinos Pliakos, Celine Vens, Grigorios Tsoumakas. Predicting Drug-Target Interactions With Multi-Label Classification and Label Partitioning
1608 -- 1619Saptarshi Pyne, Ashish Anand. Rapid Reconstruction of Time-varying Gene Regulatory Networks with Limited Main Memory
1620 -- 1631Tianshu Feng, Jaime I. Dávila, Yuanhang Liu, Sangdi Lin, Shuai Huang, Chen Wang 0001. Semi-Supervised Topological Analysis for Elucidating Hidden Structures in High-Dimensional Transcriptome Datasets
1632 -- 1642Ting Xu, Le Ou-Yang, Hong Yan 0001, Xiao-fei Zhang. Time-Varying Differential Network Analysis for Revealing Network Rewiring over Cancer Progression