| 1255 | -- | 1256 | Stephen Kwok-Wing Tsui. Editorial |
| 1257 | -- | 1266 | Jiongmin Zhang, Man Zhu, Ying Qian. protein2vec: Predicting Protein-Protein Interactions Based on LSTM |
| 1267 | -- | 1276 | Byungkyu Park, Wook Lee, Kyungsook Han. A New Approach to Deriving Prognostic Gene Pairs From Cancer Patient-Specific Gene Correlation Networks |
| 1277 | -- | 1284 | Yanbo Li, Yu Lin 0001. DCHap: A Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation Sequences |
| 1285 | -- | 1293 | Chengchuang Lin, Gansen Zhao, Zhirong Yang, Aihua Yin, Jianxin Wang 0001, Li Guo, Hanbiao Chen, Zhaohui Ma, Lei Zhao, Haoyu Luo, Tianxing Wang, Bichao Ding, Xiongwen Pang, Qiren Chen. CIR-Net: Automatic Classification of Human Chromosome Based on Inception-ResNet Architecture |
| 1294 | -- | 1301 | Shengtian Sang, Xiaoxia Liu, Xiaoyu Chen, Di Zhao 0003. A Scalable Embedding Based Neural Network Method for Discovering Knowledge From Biomedical Literature |
| 1302 | -- | 1312 | Sun-Ah Kim, Nayeon Kang, Taesung Park. Hierarchical Structured Component Analysis for Microbiome Data Using Taxonomy Assignments |
| 1313 | -- | 1321 | Ken Hung-On Yu, Xiunan Fang, Haobin Yao, Bond Ng, Tak Kwan Leung, Ling-Ling Wang, Chi-Ho Lin, Agnes Sze Wah Chan, Wai Keung Leung, Suet Yi Leung, Joshua Wing Kei Ho. Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes |
| 1322 | -- | 1333 | Yingjun Ma, Tingting He, Yuting Tan, Xingpeng Jiang. Seq-BEL: Sequence-Based Ensemble Learning for Predicting Virus-Human Protein-Protein Interaction |
| 1334 | -- | 1335 | Xiuzhen Huang, Yu Zhang, Xuan Guo. Editorial |
| 1336 | -- | 1343 | Sina Abdollahi, Peng-Chan Lin, Jung-Hsien Chiang. DiaDeL: An Accurate Deep Learning-Based Model With Mutational Signatures for Predicting Metastasis Stage and Cancer Types |
| 1344 | -- | 1353 | Nahim Adnan, Maryam Zand, Tim Hui-Ming Huang, Jianhua Ruan. Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction |
| 1354 | -- | 1364 | Tapas Bhadra, Saurav Mallik, Amir Sohel, Zhongming Zhao. Unsupervised Feature Selection Using an Integrated Strategy of Hierarchical Clustering With Singular Value Decomposition: An Integrative Biomarker Discovery Method With Application to Acute Myeloid Leukemia |
| 1365 | -- | 1378 | Lien A. Bui, Dacosta Yeboah, Louis Steinmeister, Sima Azizi, Daniel B. Hier, Donald C. Wunsch, Gayla R. Olbricht, Tayo Obafemi-Ajayi. Heterogeneity in Blood Biomarker Trajectories After Mild TBI Revealed by Unsupervised Learning |
| 1379 | -- | 1386 | Elisabetta Manduchi, Trang T. Le, Weixuan Fu, Jason H. Moore. Genetic Analysis of Coronary Artery Disease Using Tree-Based Automated Machine Learning Informed By Biology-Based Feature Selection |
| 1387 | -- | 1392 | Jason L. Causey, Jonathan Stubblefield, Jake A. Qualls, Jennifer Fowler, Lingrui Cai, Karl Walker, Yuanfang Guan, Xiuzhen Huang. An Ensemble of U-Net Models for Kidney Tumor Segmentation With CT Images |
| 1393 | -- | 1402 | Lechuan Li, Chonghao Zhang, Shiyu Liu, Hannah Guan, Yu Zhang. Age Prediction by DNA Methylation in Neural Networks |
| 1403 | -- | 1414 | Madhumita, Sushmita Paul. A Feature Weighting-Assisted Approach for Cancer Subtypes Identification From Paired Expression Profiles |
| 1415 | -- | 1423 | Lewei Zhou, Yucong Tang, Guiying Yan. A New Estimation Method for the Biological Interaction Predicting Problems |
| 1424 | -- | 1434 | Chengye Zou, Xiaopeng Wei, Qiang Zhang 0008, Changjun Zhou. A Novel Adaptive Linear Neuron Based on DNA Strand Displacement Reaction Network |
| 1435 | -- | 1448 | Hao Jiang, Fei Zhan, Congtao Wang, Jianfeng Qiu, Yansen Su, Chunhou Zheng 0001, Xingyi Zhang 0001, Xiangxiang Zeng. A Robust Algorithm Based on Link Label Propagation for Identifying Functional Modules From Protein-Protein Interaction Networks |
| 1449 | -- | 1458 | Sanjay S. Bankapur, Nagamma Patil. An Effective Multi-Label Protein Sub-Chloroplast Localization Prediction by Skipped-Grams of Evolutionary Profiles Using Deep Neural Network |
| 1459 | -- | 1471 | Liangliang Liu 0001, ShaoJie Tang, Fang-Xiang Wu, Yu-Ping Wang 0002, Jianxin Wang 0001. An Ensemble Hybrid Feature Selection Method for Neuropsychiatric Disorder Classification |
| 1472 | -- | 1483 | Maryam Pouryahya, Jung Hun Oh, Pedram Javanmard, James C. Mathews, Zehor Belkhatir, Joseph O. Deasy, Allen R. Tannenbaum. aWCluster: A Novel Integrative Network-Based Clustering of Multiomics for Subtype Analysis of Cancer Data |
| 1484 | -- | 1494 | Hu Zhang, Jingsong Chen, Tianhai Tian. Bayesian Inference of Stochastic Dynamic Models Using Early-Rejection Methods Based on Sequential Stochastic Simulations |
| 1495 | -- | 1506 | Daiane Aparecida Zuanetti, Luís Aparecido Milan. Bayesian Modeling for Epistasis Analysis Using Data-Driven Reversible Jump |
| 1507 | -- | 1522 | Alex M. Ascensión, Marcos J. Araúzo-Bravo. BigMPI4py: Python Module for Parallelization of Big Data Objects Discloses Germ Layer Specific DNA Demethylation Motifs |
| 1523 | -- | 1530 | Conghua Wang, Haihong Liu, Zhonghua Miao, Jin Zhou. Circadian Rhythm Regulated by Tumor Suppressor p53 and Time Delay in Unstressed Cells |
| 1531 | -- | 1544 | Abhinandan Khan, Goutam Saha 0002, Rajat Kumar Pal. Controlling the Effects of External Perturbations on a Gene Regulatory Network Using Proportional-Integral-Derivative Controller |
| 1545 | -- | 1557 | Omid Abbaszadeh, Ali Azarpeyvand, Alireza Khanteymoori, Abbas Bahari. Data-Driven and Knowledge-Based Algorithms for Gene Network Reconstruction on High-Dimensional Data |
| 1558 | -- | 1569 | Xiang Liu, Ning Shi, Yan Wang 0049, Zhicheng Ji, Shan He 0001. Data-Driven Boolean Network Inference Using a Genetic Algorithm With Marker-Based Encoding |
| 1570 | -- | 1582 | Debasis Gountia, Sudip Roy 0001. Design-for-Trust Techniques for Digital Microfluidic Biochip Layout With Error Control Mechanism⋆*A preliminary version of this paper appeared in the Proc. of IEEE Region 10 Symposium (TENSYMP), 2019 [1] |
| 1583 | -- | 1591 | Yashpal Yadav, Sanjeev Narayan Sharma, Devendra Kumar Shakya. Detection of Tandem Repeats in DNA Sequences Using Short-Time Ramanujan Fourier Transform |
| 1592 | -- | 1602 | Xiangmao Meng, Ju Xiang, Ruiqing Zheng, Fang-Xiang Wu, Min Li 0007. DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding |
| 1603 | -- | 1614 | Vahideh Vakil, Wade Trappe. Drug-Resistant Cancer Treatment Strategies Based on the Dynamics of Clonal Evolution and PKPD Modeling of Drug Combinations |
| 1615 | -- | 1626 | João Schapke, Anderson R. Tavares, Mariana Recamonde Mendoza. EPGAT: Gene Essentiality Prediction With Graph Attention Networks |
| 1627 | -- | 1639 | Jinwang Feng, Shaowu Zhang 0001, Luonan Chen. Extracting ROI-Based Contourlet Subband Energy Feature From the sMRI Image for Alzheimer's Disease Classification |
| 1640 | -- | 1650 | Shutao Chen, Lin Zhang, Lin Lu, Jia Meng, Hui Liu. FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model |
| 1651 | -- | 1660 | Jing Wang 0071, Haitao Wang, Hao Shen 0001, Bing Wang, Ju H. Park 0001. Finite-Time $\mathcal {H}_{\infty }$H∞ State Estimation for PDT-Switched Genetic Regulatory Networks With Randomly Occurring Uncertainties |
| 1661 | -- | 1669 | Syed Danish Ali, Waleed Alam, Hilal Tayara, Kil To Chong. Identification of Functional piRNAs Using a Convolutional Neural Network |
| 1670 | -- | 1682 | Nasrin Akhter, Kazi Lutful Kabir, Gopinath Chennupati, Raviteja Vangara, Boian S. Alexandrov, Hristo N. Djidjev, Amarda Shehu. Improved Protein Decoy Selection via Non-Negative Matrix Factorization |
| 1683 | -- | 1693 | Radhika Saraf, Aniruddha Datta, Chao Sima, Jianping Hua, Rosana Lopes, Michael L. Bittner, Tasha Miller, Heather M. Wilson-Robles. In Silico Modeling of the Induction of Apoptosis by Cryptotanshinone in Osteosarcoma Cell Lines |
| 1694 | -- | 1702 | Senbiao Fang, Ruoqian Zheng, Chuqi Lei, Jianxin Wang 0001, Renyi Zhou, Min Li 0007. In Silico Prediction of New Mutations That Can Improve the Binding Abilities Between 2019-nCoV Coronavirus and Human ACE2 |
| 1703 | -- | 1714 | Sheraz Naseer, Waqar Hussain, Yaser Daanial Khan, Nouman Rasool. iPhosS(Deep)-PseAAC: Identification of Phosphoserine Sites in Proteins Using Deep Learning on General Pseudo Amino Acid Compositions |
| 1715 | -- | 1723 | Wei Lan, Dehuan Lai, Qingfeng Chen, Ximin Wu, Baoshan Chen, Jin Liu 0012, Jianxin Wang 0001, Yi-Ping Phoebe Chen. LDICDL: LncRNA-Disease Association Identification Based on Collaborative Deep Learning |
| 1724 | -- | 1733 | Jinmiao Song, Shengwei Tian, Long Yu, Qimeng Yang, Yan Xing 0004, Chao Zhang, Qiguo Dai, Xiaodong Duan. MD-MLI: Prediction of miRNA-lncRNA Interaction by Using Multiple Features and Hierarchical Deep Learning |
| 1734 | -- | 1746 | Yidan Zhang, Lei Duan, Huiru Zheng, Jesse Li-Ling, Ruiqi Qin, Zihao Chen, Chengxin He, Tingting Wang. Mining Similar Aspects for Gene Similarity Explanation Based on Gene Information Network |
| 1747 | -- | 1759 | Pei Liu, Jiawei Luo 0001, Xiangtao Chen. miRCom: Tensor Completion Integrating Multi-View Information to Deduce the Potential Disease-Related miRNA-miRNA Pairs |
| 1760 | -- | 1771 | Gulden Olgun, Oznur Tastan. miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests |
| 1772 | -- | 1781 | Kai Hakala, Suwisa Kaewphan, Jari Björne, Farrokh Mehryary, Hans Moen, Martti Tolvanen, Tapio Salakoski, Filip Ginter. Neural Network and Random Forest Models in Protein Function Prediction |
| 1782 | -- | 1793 | Ruzhang Zhao, Shaojun Pei, Stephen Shing-Toung Yau. New Genome Sequence Detection via Natural Vector Convex Hull Method |
| 1794 | -- | 1806 | Trinh Van Giang, Kunihiko Hiraishi. On Attractor Detection and Optimal Control of Deterministic Generalized Asynchronous Random Boolean Networks |
| 1807 | -- | 1816 | Yukun Tan, Fernando B. Lima Neto, Ulisses M. Braga-Neto. PALLAS: Penalized mAximum LikeLihood and pArticle Swarms for Inference of Gene Regulatory Networks From Time Series Data |
| 1817 | -- | 1826 | Yafeng Zhao, Zhen Chen, Xuan Gao, Wenlong Song, Qiang Xiong, Junfeng Hu, Zhichao Zhang. Plant Disease Detection Using Generated Leaves Based on DoubleGAN |
| 1827 | -- | 1839 | Mehrzad Saremi, Maryam Amirmazlaghani. Reconstruction of Gene Regulatory Networks Using Multiple Datasets |
| 1840 | -- | 1849 | Fu Liu, Yan Miao, Yun Liu 0003, Tao Hou. RNN-VirSeeker: A Deep Learning Method for Identification of Short Viral Sequences From Metagenomes |
| 1850 | -- | 1860 | Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira. SEDA: A Desktop Tool Suite for FASTA Files Processing |
| 1861 | -- | 1869 | Yihe Pang, Bin Liu 0014. SelfAT-Fold: Protein Fold Recognition Based on Residue-Based and Motif-Based Self-Attention Networks |
| 1870 | -- | 1880 | Cheng-Xian Lin, Haihong Liu, Tonghua Zhang, Yuan Zhang. Stability and Bifurcation Analysis of a Diffusive miR-9/Hes1 Network With Time Delay |
| 1881 | -- | 1886 | Pietro Bongini, Neri Niccolai, Alfonso Trezza, Guido Mangiavacchi, Annalisa Santucci, Ottavia Spiga, Monica Bianchini, Simone Gardini. Structural Bioinformatic Survey of Protein-Small Molecule Interfaces Delineates the Role of Glycine in Surface Pocket Formation |
| 1887 | -- | 1896 | Malik S. A., Ajaz Hussain Mir. Synchronization of Fractional Order Neurons in Presence of Noise |
| 1897 | -- | 1908 | Chengye Zou, Qiang Zhang 0008, Xiaopeng Wei. Synchronization of Hyper-Lorenz System Based on DNA Strand Displacement |
| 1909 | -- | 1918 | Yunus Emre Isik, Yasin Görmez, Zafer Aydin, Burcu Bakir-Gungor. The Determination of Distinctive Single Nucleotide Polymorphism Sets for the Diagnosis of Behçet's Disease |