| 2610 | -- | 2618 | Mei-Neng Wang, Xue-Jun Xie, Zhu-Hong You, Leon Wong, Li-ping Li, Zhan-Heng Chen. Combining K Nearest Neighbor With Nonnegative Matrix Factorization for Predicting Circrna-Disease Associations |
| 2619 | -- | 2628 | Shixuan Guan, Quan Zou 0001, Hongjie Wu, Yijie Ding. Protein-DNA Binding Residues Prediction Using a Deep Learning Model With Hierarchical Feature Extraction |
| 2629 | -- | 2638 | Zheng-Wei Li, Qiankun Wang, Chang-an Yuan 0001, Pengyong Han, Zhu-Hong You, Lei Wang 0121. Predicting MiRNA-Disease Associations by Graph Representation Learning Based on Jumping Knowledge Networks |
| 2639 | -- | 2646 | Chengxi Huang, Wei Wang 0357, Xin Zhang, Shui-Hua Wang, Yudong Zhang 0001. Tuberculosis Diagnosis Using Deep Transferred EfficientNet |
| 2647 | -- | 2658 | Qing Ye, Xiaolong Zhang 0002, Xiaoli Lin. Drug-Target Interaction Prediction via Graph Auto-Encoder and Multi-Subspace Deep Neural Networks |
| 2659 | -- | 2670 | Shanshan Wang 0002, Ruoyou Wu, Cheng Li 0008, Juan Zou, Ziyao Zhang, Qiegen Liu, Yan-xi, Hairong Zheng. PARCEL: Physics-Based Unsupervised Contrastive Representation Learning for Multi-Coil MR Imaging |
| 2671 | -- | 2680 | Seokwoo Lee, Wook Lee, Shulei Ren, Byungkyu Park, Kyungsook Han. Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma |
| 2681 | -- | 2689 | Xinguo Lu, Guanyuan Chen, Jinxin Li, Xiangjin Hu, Fengxu Sun. MAGCN: A Multiple Attention Graph Convolution Networks for Predicting Synthetic Lethality |
| 2690 | -- | 2699 | Qinhu Zhang, Youhong Xu, Siguo Wang, Yong Wu, Yuannong Ye, Chang-an Yuan 0001, Valeriya V. Gribova, Vladimir Fedorovich Filaretov, De-Shuang Huang. Using Fully Convolutional Network to Locate Transcription Factor Binding Sites Based on DNA Sequence and Conservation Information |
| 2700 | -- | 2711 | Abbas Saad Alatrany, Wasiq Khan, Abir Jaafar Hussain, Jamila Mustafina, Dhiya Al-Jumeily. Transfer Learning for Classification of Alzheimer's Disease Based on Genome Wide Data |
| 2712 | -- | 2723 | Haochen Zhao, Guihua Duan, Peng Ni, Cheng Yan, Yaohang Li, Jianxin Wang 0001. RNPredATC: A Deep Residual Learning-Based Model With Applications to the Prediction of Drug-ATC Code Association |
| 2724 | -- | 2735 | Wuli Xu, Lei Duan, Huiru Zheng, Jesse Li-Ling, Weipeng Jiang, Yidan Zhang, Tingting Wang, Ruiqi Qin 0001. An Integrative Disease Information Network Approach to Similar Disease Detection |
| 2736 | -- | 2747 | Kevin Sutanto, Marcel Turcotte. Assessing Global-Local Secondary Structure Fingerprints to Classify RNA Sequences With Deep Learning |
| 2748 | -- | 2758 | Wei Peng 0004, Ming Liu, Wei Dai, Tielin Chen, Yu Fu, Yi Pan 0001. Multi-View Feature Aggregation for Predicting Microbe-Disease Association |
| 2759 | -- | 2771 | Ahmed Bin Zaman, Toki Tahmid Inan, Kenneth A. De Jong, Amarda Shehu. Adaptive Stochastic Optimization to Improve Protein Conformation Sampling |
| 2772 | -- | 2780 | Xiaoshuai Zhang, Lixin Wang, Hucheng Liu, Xiaofeng Zhang, Bo Liu, Yadong Wang, Junyi Li. Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions |
| 2781 | -- | 2789 | Jiatao Chen, Liang Zhang 0031, Ke Cheng, Bo Jin 0001, Xinjiang Lu, Chao Che. Predicting Drug-Target Interaction Via Self-Supervised Learning |
| 2790 | -- | 2801 | Jing Sun, Li Pan, Bin Li, Haoyue Wang, Bo Yang 0036, Wenbin Li 0005. A Construction Method of Dynamic Protein Interaction Networks by Using Relevant Features of Gene Expression Data |
| 2802 | -- | 2809 | He-Ming Chu, Xiang-Zhen Kong, Jin-Xing Liu, Chun-Hou Zheng 0001, Han Zhang. A New Binary Biclustering Algorithm Based on Weight Adjacency Difference Matrix for Analyzing Gene Expression Data |
| 2810 | -- | 2826 | Nan Sheng, Lan Huang 0002, Ling Gao, Yangkun Cao, Xuping Xie, Yan Wang 0028. A Survey of Computational Methods and Databases for lncRNA-MiRNA Interaction Prediction |
| 2827 | -- | 2836 | Ji Lv, Guixia Liu, Yuan Ju, Houhou Huang, Ying Sun. AADB: A Manually Collected Database for Combinations of Antibiotics With Adjuvants |
| 2837 | -- | 2852 | Yeganeh Madadi, Aboozar Monavarfeshani, Hao Chen 0007, W. Daniel Stamer, Robert W. Williams, Siamak Yousefi. Artificial Intelligence Models for Cell Type and Subtype Identification Based on Single-Cell RNA Sequencing Data in Vision Science |
| 2853 | -- | 2861 | Zhen Gao, Jin Tang 0001, Junfeng Xia, Chun-Hou Zheng 0001, Pi-Jing Wei. CNNGRN: A Convolutional Neural Network-Based Method for Gene Regulatory Network Inference From Bulk Time-Series Expression Data |
| 2862 | -- | 2873 | Yu Cao, Wenya Pi, Chun-Yu Lin 0003, Ulrike Münzner, Masahiro Ohtomo, Tatsuya Akutsu. Common Attractors in Multiple Boolean Networks |
| 2874 | -- | 2888 | Ze-Gang Wei, Xu Chen, Xiao-dan Zhang, Hao Zhang, Xing-Guo Fan, Hongyan Gao, Fei Liu, Yu Qian. Comparison of Methods for Biological Sequence Clustering |
| 2889 | -- | 2897 | Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi. Computing Phylo-$k$k-Mers |
| 2898 | -- | 2906 | Nian-Nian Liu, Ze-Qun Zhang, Yanan Wu, Ying-Long Wang, Ying Liang. CRBSP:Prediction of CircRNA-RBP Binding Sites Based on Multimodal Intermediate Fusion |
| 2907 | -- | 2919 | Fan Zhang 0028, Yawei Zhang, Xiaoke Zhu, Xiaopan Chen, Fuhao Lu, Xinhong Zhang. DeepSG2PPI: A Protein-Protein Interaction Prediction Method Based on Deep Learning |
| 2920 | -- | 2932 | Visweswaran Ravikumar, Tong Xu, Wajd N. Al-Holou, Salar Fattahi, Arvind Rao. Efficient Inference of Spatially-Varying Gaussian Markov Random Fields With Applications in Gene Regulatory Networks |
| 2933 | -- | 2944 | Bo Zhao, Jun Bai, Chen Li, Jianfei Zhang, Wenge Rong, Yuanxin Ouyang, Zhang Xiong 0001. Enhancing Biomedical ReQA With Adversarial Hard In-Batch Negative Samples |
| 2945 | -- | 2958 | Wenhui Tu, Guang Ling, Feng Liu 0011, Fuyan Hu, Xiangxiang Song. GCSTI: A Single-Cell Pseudotemporal Trajectory Inference Method Based on Graph Compression |
| 2959 | -- | 2969 | Suha Tuna, Cagri Gulec, Emrah Yucesan, Ayse Cirakoglu, Yelda Tarkan Arguden. Gene Teams are on the Field: Evaluation of Variants in Gene-Networks Using High Dimensional Modelling |
| 2970 | -- | 2980 | Masataka Ohashi, Shin-ichi Maeda, Chikara Sato. Helical Three Dimensional Reconstruction Using Bayesian Optimization for Cryogenic Electron Microscopy |
| 2981 | -- | 2991 | Satyaki Roy, Pratyay Dutta, Preetam Ghosh. Hierarchical Vaccine Allocation Based on Epidemiological and Behavioral Considerations |
| 2992 | -- | 3000 | Yanfen Zheng, Ben Cao, Jieqiong Wu, Bin Wang 0005, Qiang Zhang 0008. High Net Information Density DNA Data Storage by the MOPE Encoding Algorithm |
| 3001 | -- | 3012 | Jiefu Li, Aman Sawhney, Jung-Youn Lee, Li Liao. Improving Inter-Helix Contact Prediction With Local 2D Topological Information |
| 3013 | -- | 3019 | Wenxiang Zhang, Bin Liu 0014. iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework |
| 3020 | -- | 3032 | Jingfen Lan, Wenxiang Chen, Ganggang Yin, Haque A. K. Alvi, Kun Xie, Qiang Yu 0003, Xiguo Yuan. LDSSNV: A Linkage Disequilibrium-Based Method for the Detection of Somatic Single-Nucleotide Variants |
| 3033 | -- | 3043 | Chengwei Ai, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo 0001. Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association |
| 3044 | -- | 3055 | Tianyu Wu, Yang Tang, Qiyu Sun, Luolin Xiong. Molecular Joint Representation Learning via Multi-Modal Information of SMILES and Graphs |
| 3056 | -- | 3067 | Qiaoming Liu, Dong Wang, Li Zhou, Jie Li 0055, Guohua Wang. MTGDC: A Multi-Scale Tensor Graph Diffusion Clustering for Single-Cell RNA Sequencing Data |
| 3068 | -- | 3079 | Xinyu Zhu, Weiming Lu 0001. Multi-Label Classification With Dual Tail-Node Augmentation for Drug Repositioning |
| 3080 | -- | 3092 | Zhihao Ma, Zhufang Kuang, Lei Deng 0002. NGCICM: A Novel Deep Learning-Based Method for Predicting circRNA-miRNA Interactions |
| 3093 | -- | 3105 | Richard Bailey, Aisharjya Sarkar, Aaditya Singh, Alin Dobra, Tamer Kahveci. Optimal Supervised Reduction of High Dimensional Transcription Data |
| 3106 | -- | 3116 | Shouzhi Chen, Yanhong Liao, Jianping Zhao 0001, Yannan Bin, Chun-Hou Zheng 0001. PACVP: Prediction of Anti-Coronavirus Peptides Using a Stacking Learning Strategy With Effective Feature Representation |
| 3117 | -- | 3127 | Isaac Furtney, Ray M. Bradley, Mansur R. Kabuka. Patient Graph Deep Learning to Predict Breast Cancer Molecular Subtype |
| 3128 | -- | 3138 | Zihao Chen, Nan Liu, Yang Huang, Xiaoping Min, Xiangxiang Zeng, Shengxiang Ge, Jun Zhang, Ning-Shao Xia. PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network |
| 3139 | -- | 3153 | Rubén Langarita, Adrià Armejach, Pablo Ibáñez, Jesús Alastruey-Benedé, Miquel Moretó. Porting and Optimizing BWA-MEM2 Using the Fujitsu A64FX Processor |
| 3154 | -- | 3162 | Li-Juan Qiao, Zhen Gao, Cunmei Ji, Zhi-hao Liu, Chun-Hou Zheng 0001, Yu-Tian Wang. Potential circRNA-Disease Association Prediction Using DeepWalk and Nonnegative Matrix Factorization |
| 3163 | -- | 3172 | Ibrahim Berber, Cesim Erten, Hilal Kazan. Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions |
| 3173 | -- | 3181 | Yiran Huang, Zhihong Wu, Wei Lan, Cheng Zhong. 7G) Sites via Random Walk on Heterogeneous Network |
| 3182 | -- | 3194 | Xin Luo 0001, Liwei Wang, Pengwei Hu, Lun Hu. Predicting Protein-Protein Interactions Using Sequence and Network Information via Variational Graph Autoencoder |
| 3195 | -- | 3204 | Tuan D. Pham. Prediction of Five-Year Survival Rate for Rectal Cancer Using Markov Models of Convolutional Features of RhoB Expression on Tissue Microarray |
| 3205 | -- | 3214 | Ying Zhang 0053, Fang Ge, Fuyi Li, Xibei Yang, Jiangning Song, Dong-jun Yu. Prediction of Multiple Types of RNA Modifications via Biological Language Model |
| 3215 | -- | 3225 | Kanchan Jha, Sriparna Saha 0001, Sourav Karmakar. Prediction of Protein-Protein Interactions Using Vision Transformer and Language Model |
| 3226 | -- | 3233 | Zhenyu Yue, Ying Xiang, Guojun Chen, Xiaosong Wang, Ke Li, Youhua Zhang. PredinID: Predicting Pathogenic Inframe Indels in Human Through Graph Convolution Neural Network With Graph Sampling Technique |
| 3234 | -- | 3244 | Cheng-Bang Chen, Yujie Wang, Xuanya Fu, Hui Yang 0003. Recurrence Network Analysis of Histopathological Images for the Detection of Invasive Ductal Carcinoma in Breast Cancer |
| 3245 | -- | 3256 | Xinxing Yang, GenKe Yang, Jian Chu. Self-Supervised Learning for Label Sparsity in Computational Drug Repositioning |
| 3257 | -- | 3266 | Peng Chen 0001, Huimin Shen, Youzhi Zhang 0004, Bing Wang 0004, Pengying Gu. SGNet: Sequence-Based Convolution and Ligand Graph Network for Protein Binding Affinity Prediction |
| 3267 | -- | 3277 | Deng-Yao Tu, Peng-Chan Lin, Hsin-Hung Chou, Meng-Ru Shen, Sun-Yuan Hsieh. Slice-Fusion: Reducing False Positives in Liver Tumor Detection for Mask R-CNN |
| 3278 | -- | 3291 | Mengyi Tang, Kumbit Hwang, Sung Ha Kang. StemP: A Fast and Deterministic Stem-Graph Approach for RNA Secondary Structure Prediction |
| 3292 | -- | 3305 | Hongfei Zhao, Cunqi Shao, Zhiguo Shi 0001, Shibo He, Zhefeng Gong. The Intrinsic Similarity of Topological Structure in Biological Neural Networks |
| 3306 | -- | 3313 | Junlin Wang, Wenbo Wang, Yi Shang. Protein Loop Modeling Using AlphaFold2 |
| 3314 | -- | 3321 | Yongchang Liu, Peiying Li, Shikui Tu, Lei Xu 0001. RefinePocket: An Attention-Enhanced and Mask-Guided Deep Learning Approach for Protein Binding Site Prediction |
| 3322 | -- | 3328 | Zhengsen Pan, Shusen Zhou, Tong Liu, Chanjuan Liu, Mujun Zang, Qingjun Wang. WVDL: Weighted Voting Deep Learning Model for Predicting RNA-Protein Binding Sites |