| 808 | -- | 821 | Isabel González-Crespo, Antonio Gómez-Caamaño, Óscar López Pouso, John D. Fenwick, Juan Pardo-Montero. A Biomathematical Model of Tumor Response to Radioimmunotherapy With αPDL1 and αCTLA4 |
| 822 | -- | 832 | Xiong Li, Yangkai Lin, Chengwang Xie, Zejun Li, Min Chen 0028, Peng Wang 0035, Juan Zhou. A Clustering Method Unifying Cell-Type Recognition and Subtype Identification for Tumor Heterogeneity Analysis |
| 833 | -- | 842 | Min Li 0007, Wenbo Shi, Fuhao Zhang, Min Zeng, Yaohang Li. A Deep Learning Framework for Predicting Protein Functions With Co-Occurrence of GO Terms |
| 843 | -- | 851 | Xiaoqing Peng, Wenjin Zhang, Wanxin Cui, Binrong Ding, Qingtong Lyu, Jianxin Wang 0001. ADmeth: A Manually Curated Database for the Differential Methylation in Alzheimer's Disease |
| 852 | -- | 863 | Qichang Zhao, Guihua Duan, Mengyun Yang, Zhongjian Cheng, Yaohang Li, Jianxin Wang 0001. AttentionDTA: Drug-Target Binding Affinity Prediction by Sequence-Based Deep Learning With Attention Mechanism |
| 864 | -- | 874 | Jiasheng Si, Liu Sun, Deyu Zhou, Jie Ren, Lin Li. Biomedical Argument Mining Based on Sequential Multi-Task Learning |
| 875 | -- | 882 | Mahdieh Ghasemi, Maseud Rahgozar, Kaveh Kavousi. Complex Disease Genes Identification Using a Heterogeneous Network Embedding Approach |
| 883 | -- | 893 | Dong Jun Jee, Yixin Kong, Hyonho Chun. Deep Nonnegative Matrix Factorization Using a Variational Autoencoder With Application to Single-Cell RNA Sequencing Data |
| 894 | -- | 903 | Volkan Altuntas. Diffusion Alignment Coefficient (DAC): A Novel Similarity Metric for Protein-Protein Interaction Network |
| 904 | -- | 911 | Mobeen-ur-Rehman, Hilal Tayara, Kil To Chong. DL-m6A: Identification of N6-Methyladenosine Sites in Mammals Using Deep Learning Based on Different Encoding Schemes |
| 912 | -- | 922 | Zhong-Ze Yu, Chunxiang Peng, Jun Liu, Biao Zhang, Xiao-gen Zhou, Gui-jun Zhang. DomBpred: Protein Domain Boundary Prediction Based on Domain-Residue Clustering Using Inter-Residue Distance |
| 923 | -- | 931 | Xin Huang, Benzhe Su, Chenbo Zhu, Xinyu He, Xiaohui Lin 0002. Dynamic Network Construction for Identifying Early Warning Signals Based On a Data-Driven Approach: Early Diagnosis Biomarker Discovery for Gastric Cancer |
| 932 | -- | 943 | Xuan Lin, Zhe Quan, Zhi-Jie Wang 0009, Yan Guo, Xiangxiang Zeng, Philip S. Yu. Effectively Identifying Compound-Protein Interaction Using Graph Neural Representation |
| 944 | -- | 954 | Yongxian Fan, Guicong Sun, Xiaoyong Pan. ELMo4m6A: A Contextual Language Embedding-Based Predictor for Detecting RNA N6-Methyladenosine Sites |
| 955 | -- | 966 | Shamima Rashid, Suresh Sundaram 0002, Chee-Keong Kwoh 0001. Empirical Study of Protein Feature Representation on Deep Belief Networks Trained With Small Data for Secondary Structure Prediction |
| 967 | -- | 975 | Chao Wang 0043, Quan Zou 0001, Ying Ju, Hua Shi. Enhancer-FRL: Improved and Robust Identification of Enhancers and Their Activities Using Feature Representation Learning |
| 976 | -- | 985 | Shichao Liu, Yang Zhang, Yuxin Cui, Yang Qiu, Yifan Deng, Zhongfei Zhang, Wen Zhang 0008. Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural Networks |
| 986 | -- | 998 | Yang Shen, Jinlin Zhu, Zhaohong Deng, Wenwei Lu, Hongchao Wang. EnsDeepDP: An Ensemble Deep Learning Approach for Disease Prediction Through Metagenomics |
| 999 | -- | 1008 | Leandro E. Di Persia, Tiago Lopez, Agustin Arce, Diego H. Milone, Georgina Stegmayer. exp2GO: Improving Prediction of Functions in the Gene Ontology With Expression Data |
| 1009 | -- | 1019 | Filippo Castiglione, Christine Nardini, Elia Onofri, Marco Pedicini, Paolo Tieri. Explainable Drug Repurposing Approach From Biased Random Walks |
| 1020 | -- | 1029 | Tri Minh Nguyen 0005, Thomas P. Quinn, Thin Nguyen, Truyen Tran 0001. Explaining Black Box Drug Target Prediction Through Model Agnostic Counterfactual Samples |
| 1030 | -- | 1040 | Chunyan Tang, Cheng Zhong, Mian Wang, Fengfeng Zhou. FMGNN: A Method to Predict Compound-Protein Interaction With Pharmacophore Features and Physicochemical Properties of Amino Acids |
| 1041 | -- | 1052 | Jiwen Liu, Zhufang Kuang, Lei Deng 0002. GCNPCA: miRNA-Disease Associations Prediction Algorithm Based on Graph Convolutional Neural Networks |
| 1053 | -- | 1064 | Zhen Tian, Haichuan Fang, Zhixia Teng, Yangdong Ye. GOGCN: Graph Convolutional Network on Gene Ontology for Functional Similarity Analysis of Genes |
| 1065 | -- | 1072 | Thang Chu, Thuy Trang Nguyen, Bui Duong Hai, Quang Huy Nguyen, Tuan Nguyen. Graph Transformer for Drug Response Prediction |
| 1073 | -- | 1080 | Bryan Herrera-Romero, Diego Almeida-Galárraga, Graciela M. Salum, Fernando Villalba-Meneses, Marco Esteban Gudiño-Gomezjurado. GUSignal: An Informatics Tool to Analyze Glucuronidase Gene Expression in Arabidopsis Thaliana Roots |
| 1081 | -- | 1091 | Junwei Sun, Haoping Ji, Yingcong Wang, Yanfeng Wang. Hybrid Projective Synchronization via PI Controller Based on DNA Strand Displacement |
| 1092 | -- | 1103 | Vicky Zheng, Ahmet Erdem Sariyüce, Jaroslaw Zola. Identifying Taxonomic Units in Metagenomic DNA Streams on Mobile Devices |
| 1104 | -- | 1113 | Yasin Görmez, Zafer Aydin. IGPRED-MultiTask: A Deep Learning Model to Predict Protein Secondary Structure, Torsion Angles and Solvent Accessibility |
| 1114 | -- | 1124 | Yongping Du, Jingya Yan, Yuxuan Lu 0003, Yiliang Zhao, Xingnan Jin. Improving Biomedical Question Answering by Data Augmentation and Model Weighting |
| 1125 | -- | 1136 | S. Sujamol, Vimina E. R. 0001, Krishnakumar U.. Improving miRNA Disease Association Prediction Accuracy Using Integrated Similarity Information and Deep Autoencoders |
| 1137 | -- | 1146 | Xueli Song, Rongpeng Li, Kaiming Wang, Yuntong Bai, Yuzhu Xiao, Yu-Ping Wang 0002. Joint Sparse Collaborative Regression on Imaging Genetics Study of Schizophrenia |
| 1147 | -- | 1155 | Changzhi Jiang, Minli Tang, Shuting Jin, Wei Huang, Xiangrong Liu. KGNMDA: A Knowledge Graph Neural Network Method for Predicting Microbe-Disease Associations |
| 1156 | -- | 1169 | Xianyu Zhu, Jinjiang Li, Runchang Jia, Bin Liu 0023, Zhuohan Yao, Aihong Yuan, Yingqiu Huo, Haixi Zhang. LAD-Net: A Novel Light Weight Model for Early Apple Leaf Pests and Diseases Classification |
| 1170 | -- | 1179 | Xiaoke Ma, Wei Zhao, Wenming Wu. Layer-Specific Modules Detection in Cancer Multi-Layer Networks |
| 1180 | -- | 1187 | Zhengsen Pan, Shusen Zhou, Hailin Zou, Chanjuan Liu, Mujun Zang, Tong Liu, Qingjun Wang. MCNN: Multiple Convolutional Neural Networks for RNA-Protein Binding Sites Prediction |
| 1188 | -- | 1199 | Ashish Ranjan 0003, Md. S. Fahad, David Fernández-Baca, Sudhakar Tripathi, Akshay Deepak. MCWS-Transformers: Towards an Efficient Modeling of Protein Sequences via Multi Context-Window Based Scaled Self-Attention |
| 1200 | -- | 1210 | Xixi Yang, Zhangming Niu, Yuansheng Liu, Bosheng Song, Weiqiang Lu, Li Zeng, Xiangxiang Zeng. Modality-DTA: Multimodality Fusion Strategy for Drug-Target Affinity Prediction |
| 1211 | -- | 1220 | Pietro Bongini, Franco Scarselli, Monica Bianchini, Giovanna Maria Dimitri, Niccolò Pancino, Pietro Lió. Modular Multi-Source Prediction of Drug Side-Effects With DruGNN |
| 1221 | -- | 1233 | Raeed Al-Sabri, Jianliang Gao, Jiamin Chen, Moctard Babatounde Oloulade, Tengfei Lyu. Multi-View Graph Neural Architecture Search for Biomedical Entity and Relation Extraction |
| 1234 | -- | 1245 | Yuqing Qian, Yijie Ding, Quan Zou 0001, Fei Guo 0001. Multi-View Kernel Sparse Representation for Identification of Membrane Protein Types |
| 1246 | -- | 1256 | Shixuan Guan, Yuqing Qian, Tengsheng Jiang, Min Jiang, Yijie Ding, Hongjie Wu. MV-H-RKM: A Multiple View-Based Hypergraph Regularized Restricted Kernel Machine for Predicting DNA-Binding Proteins |
| 1257 | -- | 1268 | Jihwan Ha, Sanghyun Park 0003. NCMD: Node2vec-Based Neural Collaborative Filtering for Predicting MiRNA-Disease Association |
| 1269 | -- | 1277 | Yuhao Feng, Lei Qi, Weidong Tian. PhenoBERT: A Combined Deep Learning Method for Automated Recognition of Human Phenotype Ontology |
| 1278 | -- | 1288 | Kangchen Liu, Xiujun Zhang. PiTLiD: Identification of Plant Disease From Leaf Images Based on Convolutional Neural Network |
| 1289 | -- | 1297 | Vincent Moulton, Taoyang Wu. Planar Rooted Phylogenetic Networks |
| 1298 | -- | 1307 | Huan Zhao, ZhengWei Li, Zhu-Hong You, Ru Nie, Tangbo Zhong. Predicting Mirna-Disease Associations Based on Neighbor Selection Graph Attention Networks |
| 1308 | -- | 1318 | Huizhe Zhang, Juntao Fang, Yuping Sun, Guobo Xie, Zhiyi Lin, Guosheng Gu. Predicting miRNA-Disease Associations via Node-Level Attention Graph Auto-Encoder |
| 1319 | -- | 1326 | Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li 0001. Predicting TF Proteins by Incorporating Evolution Information Through PSSM |
| 1327 | -- | 1336 | Amandeep Kaur, Ajay Pal Singh Chauhan, Ashwani Kumar Aggarwal. Prediction of Enhancers in DNA Sequence Data using a Hybrid CNN-DLSTM Model |
| 1337 | -- | 1344 | Ke Yan 0003, Hongwu Lv, Jie Wen 0001, Yichen Guo, Yong Xu 0001, Bin Liu 0014. PreTP-Stack: Prediction of Therapeutic Peptides Based on the Stacked Ensemble Learing |
| 1345 | -- | 1362 | Alexander V. Spirov, Ekaterina M. Myasnikova. Problem of Domain/Building Block Preservation in the Evolution of Biological Macromolecules and Evolutionary Computation |
| 1363 | -- | 1371 | Muhammad Arsalan, Tariq Mahmood Khan, Syed Saud Naqvi, Mehmood Nawaz, Imran Razzak. Prompt Deep Light-Weight Vessel Segmentation Network (PLVS-Net) |
| 1372 | -- | 1383 | Nikhilanand Arya, Archana Mathur, Snehanshu Saha, Sriparna Saha 0001. Proposal of SVM Utility Kernel for Breast Cancer Survival Estimation |
| 1384 | -- | 1394 | Hangjin Jiang, Han Li, Wing Hung Wong, Xiaodan Fan. Revealing Free Energy Landscape From MD Data via Conditional Angle Partition Tree |
| 1395 | -- | 1405 | Amir Hossein Abolmasoumi, Mohammad Mohammadian, Lamine Mili. Robust KALMAN Filter State Estimation for Gene Regulatory Networks |
| 1406 | -- | 1416 | Jian Zhang 0020, Feng Zhou, Xingchen Liang, Guifu Yang. SCAMPER: Accurate Type-Specific Prediction of Calcium-Binding Residues Using Sequence-Derived Features |
| 1417 | -- | 1430 | Eleanor Wedell, Yirong Cai, Tandy J. Warnow. SCAMPP: Scaling Alignment-Based Phylogenetic Placement to Large Trees |
| 1431 | -- | 1444 | Xiaoqing Cheng, Chang Yan, Hao Jiang 0009, Yushan Qiu. scHOIS: Determining Cell Heterogeneity Through Hierarchical Clustering Based on Optimal Imputation Strategy |
| 1445 | -- | 1456 | Bo Li, Ke Jin, Le Ou-Yang, Hong Yan 0001, Xiao-fei Zhang. scTSSR2: Imputing Dropout Events for Single-Cell RNA Sequencing Using Fast Two-Side Self-Representation |
| 1457 | -- | 1468 | Yatong Jiang, Tao Shang, Jianwei Liu 0001. Secure Counting Query Protocol for Genomic Data |
| 1469 | -- | 1479 | Xinyi Wang, Mingyang Zhang, Chunlin Long, Lin Yao, Min Zhu. Self-Attention Based Neural Network for Predicting RNA-Protein Binding Sites |
| 1480 | -- | 1491 | Ping Xuan, Yue Zhao, Hui Cui 0002, Linyun Zhan, Qiangguo Jin, Tiangang Zhang, Toshiya Nakaguchi. Semantic Meta-Path Enhanced Global and Local Topology Learning for lncRNA-Disease Association Prediction |
| 1492 | -- | 1505 | Xishuang Dong, Shanta Chowdhury, Uboho Victor, Xiangfang Li, Lijun Qian. Semi-Supervised Deep Learning for Cell Type Identification From Single-Cell Transcriptomic Data |
| 1506 | -- | 1517 | Xinxing Yang, GenKe Yang, Jian Chu. The Computational Drug Repositioning Without Negative Sampling |
| 1518 | -- | 1528 | Yunqi Wan, Zhenran Jiang. TransCrispr: Transformer Based Hybrid Model for Predicting CRISPR/Cas9 Single Guide RNA Cleavage Efficiency |
| 1529 | -- | 1539 | Shankey Garg, Pradeep Singh 0001. Transfer Learning Based Lightweight Ensemble Model for Imbalanced Breast Cancer Classification |
| 1540 | -- | 1549 | Takeyuki Tamura. Trimming Gene Deletion Strategies for Growth-Coupled Production in Constraint-Based Metabolic Networks: TrimGdel |
| 1550 | -- | 1562 | Borja Freire, Susana Ladra, José R. Paramá, Leena Salmela. ViQUF: De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks |
| 1563 | -- | 1573 | Xuekun Song, Ke Liang, Juntao Li. WGRLR: A Weighted Group Regularized Logistic Regression for Cancer Diagnosis and Gene Selection |
| 1574 | -- | 1580 | Aimin Li, Siqi Xiong, Junhuai Li, Saurav Mallik, Yajun Liu, Rong Fei, Hongfang Zhou, Guangming Liu. AngClust: Angle Feature-Based Clustering for Short Time Series Gene Expression Profiles |
| 1581 | -- | 1586 | Donglin Wang, Don Hong, Qiang Wu 0003. Attention Deficit Hyperactivity Disorder Classification Based on Deep Learning |
| 1587 | -- | 1593 | Junqiao Qiu, Ali Ebnenasir. Exploring Scalable Parallelization for Edit Distance-Based Motif Search |
| 1594 | -- | 1599 | Lijun Quan, Xiaomin Chu, Xiaoyu Sun, Tingfang Wu, Qiang Lyu. How Deepbics Quantifies Intensities of Transcription Factor-DNA Binding and Facilitates Prediction of Single Nucleotide Variant Pathogenicity With a Deep Learning Model Trained On ChIP-Seq Data Sets |
| 1600 | -- | 1605 | Aditi Jain, Arvind Kumar Gupta. Modeling mRNA Translation With Ribosome Abortions |
| 1606 | -- | 1612 | Xiaojuan Wang, Wen Yang, Yue Yang, Yizhou He, Jun Zhang, Lusheng Wang, Lun Hu. PPISB: A Novel Network-Based Algorithm of Predicting Protein-Protein Interactions With Mixed Membership Stochastic Blockmodel |
| 1613 | -- | 1618 | Elizabeth S. Allman, Hector Baños, John A. Rhodes. Testing Multispecies Coalescent Simulators Using Summary Statistics |