| 3329 | -- | 3331 | Zhipeng Cai 0001, Min Li 0007, Pavel Skums, Yanjie Wei. Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications |
| 3332 | -- | 3342 | Hunmin Lee, Mingon Kang, Donghyun Kim 0001, Daehee Seo, Yingshu Li. Epidemic Vulnerability Index for Effective Vaccine Distribution Against Pandemic |
| 3343 | -- | 3352 | Qing Zhao 0005, JianQiang Li, Linna Zhao, Zhichao Zhu. Knowledge Guided Feature Aggregation for the Prediction of Chronic Obstructive Pulmonary Disease With Chinese EMRs |
| 3353 | -- | 3362 | Yueyue Wang, Xiujuan Lei, Yi Pan. Microbe-Disease Association Prediction Using RGCN Through Microbe-Drug-Disease Network |
| 3363 | -- | 3375 | Wei Peng 0004, Zicheng Che, Wei Dai, Shoulin Wei, Wei Lan. Predicting miRNA-Disease Associations From miRNA-Gene-Disease Heterogeneous Network With Multi-Relational Graph Convolutional Network Model |
| 3376 | -- | 3388 | Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdadullah Khan, Murray Patterson. Efficient Approximate Kernel Based Spike Sequence Classification |
| 3389 | -- | 3398 | Yuxia Guan, Ying An, Jingrui Xu, Ning Liu, Jianxin Wang 0001. HA-ResNet: Residual Neural Network With Hidden Attention for ECG Arrhythmia Detection Using Two-Dimensional Signal |
| 3399 | -- | 3410 | Qiang Li, Hong Song, Zenghui Wei, Fengbo Yang, Jingfan Fan, Danni Ai, Yucong Lin, Xiaoling Yu, Jian Yang 0009. Densely Connected U-Net With Criss-Cross Attention for Automatic Liver Tumor Segmentation in CT Images |
| 3411 | -- | 3420 | Zhilong Lv, Yuexiao Lin, Rui Yan, Ying Wang 0043, Fa Zhang 0001. TransSurv: Transformer-Based Survival Analysis Model Integrating Histopathological Images and Genomic Data for Colorectal Cancer |
| 3421 | -- | 3429 | Cheng Chen, Yuguo Zha, Daming Zhu, Kang Ning 0001, Xuefeng Cui. ContactLib-ATT: A Structure-Based Search Engine for Homologous Proteins |
| 3430 | -- | 3439 | Jiamin Chen, Jianliang Gao, Tengfei Lyu, Oloulade Babatounde Moctard, Xiaohua Hu 0001. AutoMSR: Auto Molecular Structure Representation Learning for Multi-label Metabolic Pathway Prediction |
| 3440 | -- | 3450 | Hong-Dong Li, Chao Deng, Xiao-qi Zhang, Cui-Xiang Lin. A Gene Set-Integrated Approach for Predicting Disease-Associated Genes |
| 3451 | -- | 3460 | Haitao Fu, Cecheng Zhao, Xiaohui Niu, Wen Zhang 0008. DRLM: A Robust Drug Representation Learning Method and its Applications |
| 3461 | -- | 3468 | Yurong Qian, Jingjing Zheng, Ying Jiang, Shaoqiu Li, Lei Deng 0002. Prediction of circRNA-MiRNA Association Using Singular Value Decomposition and Graph Neural Networks |
| 3469 | -- | 3481 | Enhao Cheng, Jun Zhao, Hong Wang 0015, Shuguang Song, Shuxian Xiong, Yanshen Sun. Dual Network Contrastive Learning for Predicting Microbe-Disease Associations |
| 3482 | -- | 3488 | Tiansu Gong, Fusong Ju, Shiwei Sun, Dongbo Bu. SASA-Net: A Spatial-Aware Self-Attention Mechanism for Building Protein 3D Structure Directly From Inter- Residue Distances |
| 3489 | -- | 3498 | Huan Wang 0005, Ruigang Liu, Baijing Wang, Yifan Hong, Ziwen Cui, Qiufen Ni. Multitype Perception Method for Drug-Target Interaction Prediction |
| 3499 | -- | 3510 | Qingqing Cao, Jianping Zhao 0001, Hai-Yun Wang, Qi Guan, Chun-Hou Zheng 0001. An Integrated Method Based on Wasserstein Distance and Graph for Cancer Subtype Discovery |
| 3511 | -- | 3522 | Abhijit Mondal, Mukul S. Bansal. Generalizing the Domain-Gene-Species Reconciliation Framework to Microbial Genes and Domains |
| 3523 | -- | 3534 | Han Zhang, Zexuan Zhu, Hui Li, Shan He 0001. Network Biomarker Detection From Gene Co-Expression Network Using Gaussian Mixture Model Clustering |
| 3535 | -- | 3546 | Wenming Wu, Wensheng Zhang 0002, Weimin Hou, Xiaoke Ma. Multi-View Clustering With Graph Learning for scRNA-Seq Data |
| 3547 | -- | 3555 | Dayun Liu, Xianghui Li, LiangLiang Zhang, Xiaowen Hu, Jiaxuan Zhang, Zhirong Liu, Lei Deng 0002. HGNNLDA: Predicting lncRNA-Drug Sensitivity Associations via a Dual Channel Hypergraph Neural Network |
| 3556 | -- | 3566 | Jing Yang, Zhengshu Lu, Xu Chen, Deling Xu, Dewu Ding, Yanrui Ding. GCNA-Cluster: A Gene Co-Expression Network Alignment to Cluster Cancer Patients Algorithm for Identifying Subtypes of Pancreatic Ductal Adenocarcinoma |
| 3567 | -- | 3574 | Baoli Jia, Qingfang Meng, Yuehui Chen, Hongri Yang. Prediction of Membrane Protein Amphiphilic Helix Based on Horizontal Visibility Graph and Graph Convolution Network |
| 3575 | -- | 3587 | Kayode Yakub Saheed, Bukola Fatimah Balogun, Braimah Joseph Odunayo, Mustapha Abdulsalam. Microarray Gene Expression Data Classification via Wilcoxon Sign Rank Sum and Novel Grey Wolf Optimized Ensemble Learning Models |
| 3588 | -- | 3599 | Yinyin Gong, Rui Li, Bin Fu, Yan Liu 0032, Jilong Wang 0002, Renfa Li, Danny Z. Chen. A CNN-LSTM Ensemble Model for Predicting Protein-Protein Interaction Binding Sites |
| 3600 | -- | 3608 | Xin Wang, Jie Li 0055, Guohua Wang. MicroRNA Promoter Identification in Human With a Three-level Prediction Method |
| 3609 | -- | 3622 | Yahui Cao, Tao Zhang 0025, Xin Zhao 0006, Xue Jia, Bingzhi Li. MooSeeker: A Metabolic Pathway Design Tool Based on Multi-Objective Optimization Algorithm |
| 3623 | -- | 3634 | Taoning Chen, Tingfang Wu, Deng Pan, Jinxing Xie, Jin Zhi, Xuejiao Wang, Lijun Quan, Qiang Lyu. TransRNAm: Identifying Twelve Types of RNA Modifications by an Interpretable Multi-Label Deep Learning Model Based on Transformer |
| 3635 | -- | 3647 | Weizhong Zhao, Wenjie Yao, Xingpeng Jiang, Tingting He 0003, Chuan Shi, Xiaohua Hu 0001. An Explainable Framework for Predicting Drug-Side Effect Associations via Meta-Path-Based Feature Learning in Heterogeneous Information Network |
| 3648 | -- | 3659 | Farnaz Sabahi. A Design of mRNA-Based COVID-19 Vaccine Through Fuzzy Neural Network |
| 3660 | -- | 3668 | Pedro Martínez-Paz, Javier Gomez-Pilar, Marta Martín-Fernández, Francisco C. Ceballos, Esther Gómez-Sánchez, Roberto Hornero, Eduardo Tamayo. Gene Co-Expression Networks Offer New Perspectives on Sepsis Pathophysiology |
| 3669 | -- | 3680 | Ran Liu, Ye-Fan Hu, Jin Du, Bao-Zhong Zhang, Thomas Yau, Xiaodan Fan, Jian-Dong Huang. Family-Specific Training Improves Linear B Cell Epitope Prediction for Emerging Viruses |
| 3681 | -- | 3690 | Pietro Bongini, Elisa Messori, Niccolò Pancino, Monica Bianchini. A Deep Learning Approach to the Prediction of Drug Side-Effects on Molecular Graphs |
| 3691 | -- | 3702 | Azwad Tamir, Milad Salem, Jiann-shiun Yuan. ProtEC: A Transformer Based Deep Learning System for Accurate Annotation of Enzyme Commission Numbers |
| 3703 | -- | 3714 | Chun-Pang Lin, Yajie Duan, Davit Sargsyan, Javier Cabrera, Christine M. Livingston, Robert Vogel, John Hartman, Mayukh Das, Willem Talloen, Helena Geys, Evangelos D. Kanoulas, Surya Mohanty. Automated Spot Counting in Microbiology |
| 3715 | -- | 3724 | Haochen Zhao, Ruihong Du, Ruikang Zhou, Suning Li, Guihua Duan, Jianxin Wang 0001. SCN-MLTPP: A Multi-Label Classifier for Predicting Therapeutic Properties of Peptides Using the Stacked Capsule Network |
| 3725 | -- | 3736 | Xiaojian Ding, Fan Yang 0071, Fumin Ma, Shilin Chen. A Unified Multi-Class Feature Selection Framework for Microarray Data |
| 3737 | -- | 3747 | Jin-Xing Liu, Dai-Jun Zhang, Jing-Xiu Zhao, Chun-Hou Zheng 0001, Ying-Lian Gao. Non-Negative Low-Rank Representation With Similarity Correction for Cell Type Identification in scRNA-Seq Data |
| 3748 | -- | 3758 | Takeyuki Tamura. MetNetComp: Database for Minimal and Maximal Gene-Deletion Strategies for Growth-Coupled Production of Genome-Scale Metabolic Networks |
| 3759 | -- | 3771 | Xue Liu, Qian Cheng, Dan Sun, Wei Wei 0020, Zhiming Zheng 0001. Anonymous Pattern Molecular Fingerprint and its Applications on Property Identification |
| 3772 | -- | 3785 | Lijia Ma, Wenwei Deng, Yuan Bai, Zhanwei Du, Minfeng Xiao, Lin Wang 0012, Jianqiang Li 0001, Asoke K. Nandi. Identifying Phage Sequences From Metagenomic Data Using Deep Neural Network With Word Embedding and Attention Mechanism |
| 3786 | -- | 3799 | Md. Al Mehedi Hasan, Md. Maniruzzaman, Jungpil Shin 0001. Gene Expression and Metadata Based Identification of Key Genes for Hepatocellular Carcinoma Using Machine Learning and Statistical Models |
| 3800 | -- | 3808 | Hyunwook Koh. Subgroup Identification Using Virtual Twins for Human Microbiome Studies |
| 3809 | -- | 3819 | Likun Jiang, Nan Sun, Yue Zhang, Xinyu Yu, Xiangrong Liu. Bioactive Peptide Recognition Based on NLP Pre-Train Algorithm |
| 3820 | -- | 3829 | Yuguang Li, Shuai Lu, Qiang Ma, Xiaofei Nan, Shoutao Zhang. Protein-Protein Interaction Site Prediction Based on Attention Mechanism and Convolutional Neural Networks |
| 3830 | -- | 3841 | Xingxing Zhou, Ming Ling, Qingde Lin, Shidi Tang, Jiansheng Wu, Haifeng Hu 0004. Effectiveness Analysis of Multiple Initial States Simulated Annealing Algorithm, a Case Study on the Molecular Docking Tool AutoDock Vina |
| 3842 | -- | 3850 | Aryan Tajmir Riahi, Geoffrey Woollard, Frédéric Poitevin, Anne Condon, Khanh Dao Duc. AlignOT: An Optimal Transport Based Algorithm for Fast 3D Alignment With Applications to Cryogenic Electron Microscopy Density Maps |
| 3851 | -- | 3862 | Xiaoyu Guan, Daoqiang Zhang. T-MGCL: Molecule Graph Contrastive Learning Based on Transformer for Molecular Property Prediction |
| 3863 | -- | 3875 | Baoquan Zhang, Chuyao Luo, Hao Jiang, Shanshan Feng, Xutao Li, Bowen Zhang 0005, Yunming Ye. Adaptive Transfer of Graph Neural Networks for Few-Shot Molecular Property Prediction |
| 3876 | -- | 3888 | Liyun Tong, Jinling Liang, Hong-xiang Hu. Fault Detectability of Asynchronous Switched Boolean Networks: A Set Reachability Approach |
| 3889 | -- | 3900 | Cunmei Ji, Ning Yu, Yu-Tian Wang, Rong Qi, Chun-Hou Zheng 0001. An End-to-End Deep Hybrid Autoencoder Based Method for Single-Cell RNA-Seq Data Analysis |