Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 9, Issue 2

321 -- 329Nianyin Zeng, Zidong Wang, Yurong Li, Min Du, Xiaohui Liu. A Hybrid EKF and Switching PSO Algorithm for Joint State and Parameter Estimation of Lateral Flow Immunoassay Models
330 -- 344Biing-Feng Wang, Chung-Chin Kuo, Shang-Ju Liu, Chien-Hsin Lin. A New Efficient Algorithm for the Gene-Team Problem on General Sequences
345 -- 357Sascha Steinbiss, Stefan Kurtz. A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences
358 -- 371Kyriakos Kentzoglanakis, Matthew Poole. A Swarm Intelligence Framework for Reconstructing Gene Networks: Searching for Biologically Plausible Architectures
372 -- 384Zhi-Zhong Chen, Lusheng Wang. Algorithms for Reticulate Networks of Multiple Phylogenetic Trees
385 -- 394Sandro Andreotti, Gunnar W. Klau, Knut Reinert. Antilope - A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem
395 -- 407Andreas Spillner 0001, Binh T. Nguyen, Vincent Moulton. Constructing and Drawing Regular Planar Split Networks
408 -- 420Selim Mimaroglu, Emin Aksehirli. DICLENS: Divisive Clustering Ensemble with Automatic Cluster Number
421 -- 429M. Oguzhan Külekci, Jeffrey Scott Vitter, Bojian Xu. Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree
430 -- 437Daifeng Wang, Mia K. Markey, Claus O. Wilke, Ari Arapostathis. Eigen-Genomic System Dynamic-Pattern Analysis (ESDA): Modeling mRNA Degradation and Self-Regulation
438 -- 450Lipi R. Acharya, Thair Judeh, Zhansheng Duan, Michael Rabbat, Dongxiao Zhu. GSGS: A Computational Approach to Reconstruct Signaling Pathway Structures from Gene Sets
451 -- 466Ola ElBakry, M. Omair Ahmad, M. N. S. Swamy. Identification of Differentially Expressed Genes for Time-Course Microarray Data Based on Modified RM ANOVA
467 -- 475Loris Nanni, Alessandra Lumini, Dinesh Gupta, Aarti Garg. Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information
476 -- 486Yi-Ming Cheng, Srinivasa Murthy Gopal, Sean M. Law, Michael Feig. Molecular Dynamics Trajectory Compression with a Coarse-Grained Model
487 -- 498Martin Hopfensitz, Christoph Müssel, Christian Wawra, Markus Maucher, Michael Kühl, Heiko Neumann, Hans A. Kestler. Multiscale Binarization of Gene Expression Data for Reconstructing Boolean Networks
499 -- 510Wenji Ma, Yong Yang, Zhi-Zhong Chen, Lusheng Wang. Mutation Region Detection for Closely Related Individuals without a Known Pedigree
511 -- 516Aleksandar Poleksic. On Complexity of Protein Structure Alignment Problem under Distance Constraint
517 -- 534Steven Kelk, Celine Scornavacca, Leo van Iersel. On the Elusiveness of Clusters
535 -- 547Paul Phipps, Sergey Bereg. Optimizing Phylogenetic Networks for Circular Split Systems
548 -- 559Biing-Feng Wang. Output-Sensitive Algorithms for Finding the Nested Common Intervals of Two General Sequences
560 -- 570Qinghua Huang, Dacheng Tao, Xuelong Li, Alan Liew. Parallelized Evolutionary Learning for Detection of Biclusters in Gene Expression Data
571 -- 579Ioannis Karafyllidis. Quantum Gate Circuit Model of Signal Integration in Bacterial Quorum Sensing
580 -- 591Shu-Ling Wang, Yi-Hai Zhu, Wei Jia, De-Shuang Huang. Robust Classification Method of Tumor Subtype by Using Correlation Filters
592 -- 600Barbara Di Camillo, Marco Falda, Gianna Toffolo, Claudio Cobelli. SimBioNeT: A Simulator of Biological Network Topology
601 -- 608Ulavappa B. Angadi, M. Venkatesulu. Structural SCOP Superfamily Level Classification Using Unsupervised Machine Learning
609 -- 618Yongwook Yoon, Gary Geunbae Lee. Subcellular Localization Prediction through Boosting Association Rules
619 -- 628Chien-Hao Su, Tse-Yi Wang, Ming-Tsung Hsu, Francis Cheng-Hsuan Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai. The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes
629 -- 636Zeny Z. Feng, Xiaojian Yang, Sanjeena Subedi, Paul D. McNicholas. The LASSO and Sparse Least Squares Regression Methods for SNP Selection in Predicting Quantitative Traits