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Aligning sequences with non-Affine Gap penalty: Plains Algorithm, a Practical Implementation, and its biological Applications in Comparative genomics

Ofer H. Gill, Yi Zhou, Bud Mishra. Aligning sequences with non-Affine Gap penalty: Plains Algorithm, a Practical Implementation, and its biological Applications in Comparative genomics. In Matthew He, Giri Narasimhan, Sergei Petoukhov, editors, Advances in Bioinformatics and Its Applications. Volume 8 of Series in mathematical biology and medicine, World Scientific, 2005. [doi]

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