CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples

Yu Liu, Paul W. Bible, Bin Zou, Qiaoxing Liang, Cong Dong, Xiaofeng Wen, Yan Li, Xiaofei Ge, Xifang Li, Xiuli Deng, Rong Ma, Shixin Guo, Juanran Liang, Tingting Chen, Wenliang Pan, Lixin Liu, Wei Chen, Xueqin Wang, Lai Wei. CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples. Bioinformatics, 36(5):1577-1583, 2020. [doi]

@article{LiuBZLDWLGLDMGL20,
  title = {CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples},
  author = {Yu Liu and Paul W. Bible and Bin Zou and Qiaoxing Liang and Cong Dong and Xiaofeng Wen and Yan Li and Xiaofei Ge and Xifang Li and Xiuli Deng and Rong Ma and Shixin Guo and Juanran Liang and Tingting Chen and Wenliang Pan and Lixin Liu and Wei Chen and Xueqin Wang and Lai Wei},
  year = {2020},
  doi = {10.1093/bioinformatics/btz790},
  url = {https://doi.org/10.1093/bioinformatics/btz790},
  researchr = {https://researchr.org/publication/LiuBZLDWLGLDMGL20},
  cites = {0},
  citedby = {0},
  journal = {Bioinformatics},
  volume = {36},
  number = {5},
  pages = {1577-1583},
}