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David E. Shaw, Martin M. Deneroff, Ron O. Dror, Jeffrey Kuskin, Richard H. Larson, John K. Salmon, Cliff Young, Brannon Batson, Kevin J. Bowers, Jack C. Chao, Michael P. Eastwood, Joseph Gagliardo, John P. Grossman, Richard C. Ho, Doug Ierardi, István Kolossváry, John L. Klepeis, Timothy Layman, Christine McLeavey, Mark A. Moraes, Rolf Mueller, Edward C. Priest, Yibing Shan, Jochen Spengler, Michael Theobald, Brian Towles, Stanley C. Wang. Anton, a special-purpose machine for molecular dynamics simulation. In Dean M. Tullsen, Brad Calder, editors, 34th International Symposium on Computer Architecture (ISCA 2007), June 9-13, 2007, San Diego, California, USA. pages 1-12, ACM, 2007. [doi]

The following publications are possibly variants of this publication:

Anton, a special-purpose machine for molecular dynamics simulationDavid E. Shaw, Martin M. Deneroff, Ron O. Dror, Jeffrey Kuskin, Richard H. Larson, John K. Salmon, Cliff Young, Brannon Batson, Kevin J. Bowers, Jack C. Chao, Michael P. Eastwood, Joseph Gagliardo, John P. Grossman, Richard C. Ho, Doug Ierardi, István Kolossváry, John L. Klepeis, Timothy Layman, Christine McLeavey, Mark A. Moraes, Rolf Mueller, Edward C. Priest, Yibing Shan, Jochen Spengler, Michael Theobald, Brian Towles, Stanley C. Wang. CACM, 51(7):91-97, 2008. [doi]

Millisecond-scale molecular dynamics simulations on AntonDavid E. Shaw, Ron O. Dror, John K. Salmon, John P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles. sc 2009: [doi]

Millisecond-scale molecular dynamics simulations on AntonDavid E. Shaw, Ron O. Dror, John K. Salmon, John P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles. sc 2009: [doi]

Extending the Generality of Molecular Dynamics Simulations on a Special-Purpose MachineDaniele Paolo Scarpazza, Douglas J. Ierardi, Adam K. Lerer, Kenneth M. Mackenzie, Albert C. Pan, Joseph A. Bank, Edmond Chow, Ron O. Dror, J. P. Grossman, Daniel Killebrew, Mark A. Moraes, Cristian Predescu, John K. Salmon, David E. Shaw. ipps 2013: 933-945 [doi]

Incorporating flexibility in Anton, a specialized machine for molecular dynamics simulationJeffrey Kuskin, Cliff Young, John P. Grossman, Brannon Batson, Martin M. Deneroff, Ron O. Dror, David E. Shaw. hpca 2008: 343-354 [doi]

Anton: A Specialized Machine for Millisecond-Scale Molecular Dynamics Simulations of ProteinsDavid E. Shaw. arith 2009: 3 [doi]

Anton 2: Raising the Bar for Performance and Programmability in a Special-Purpose Molecular Dynamics SupercomputerDavid E. Shaw, J. P. Grossman, Joseph A. Bank, Brannon Batson, J. Adam Butts, Jack C. Chao, Martin M. Deneroff, Ron O. Dror, Amos Even, Christopher H. Fenton, Anthony Forte, Joseph Gagliardo, Gennette Gill, Brian Greskamp, Richard C. Ho, Douglas J. Ierardi, Lev Iserovich, Jeffrey Kuskin, Richard H. Larson, Timothy Layman, Li-Siang Lee, Adam K. Lerer, Chester Li, Daniel Killebrew, Kenneth M. Mackenzie, Shark Yeuk-Hai Mok, Mark A. Moraes, Rolf Mueller, Lawrence J. Nociolo, Jon L. Peticolas, Terry Quan, Daniel Ramot, John K. Salmon, Daniele Paolo Scarpazza, U. Ben Schafer, Naseer Siddique, Christopher W. Snyder, Jochen Spengler, Ping Tak Peter Tang, Michael Theobald, Horia Toma, Brian Towles, Benjamin Vitale, Stanley C. Wang, Cliff Young. sc 2014: 41-53 [doi]

Anton 3: twenty microseconds of molecular dynamics simulation before lunchDavid E. Shaw, Peter J. Adams, Asaph Azaria, Joseph A. Bank, Brannon Batson, Alistair Bell, Michael Bergdorf, Jhanvi Bhatt, J. Adam Butts, Timothy Correia, Robert M. Dirks, Ron O. Dror, Michael P. Eastwood, Bruce Edwards, Amos Even, Peter Feldmann, Michael Fenn, Christopher H. Fenton, Anthony Forte, Joseph Gagliardo, Gennette Gill, Maria Gorlatova, Brian Greskamp, J. P. Grossman, Justin Gullingsrud, Anissa Harper, William Hasenplaugh, Mark Heily, Benjamin Colin Heshmat, Jeremy Hunt, Douglas J. Ierardi, Lev Iserovich, Bryan L. Jackson, Nick P. Johnson, Mollie M. Kirk, John L. Klepeis, Jeffrey S. Kuskin, Kenneth M. Mackenzie, Roy J. Mader, Richard McGowen, Adam McLaughlin, Mark A. Moraes, Mohamed H. Nasr, Lawrence J. Nociolo, Lief O'Donnell, Andrew Parker, Jon L. Peticolas, Goran Pocina, Cristian Predescu, Terry Quan, John K. Salmon, Carl Schwink, Keun Sup Shim, Naseer Siddique, Jochen Spengler, Tamas Szalay, Raymond Tabladillo, Reinhard Tartler, Andrew G. Taube, Michael Theobald, Brian Towles, William Vick, Stanley C. Wang, Michael Wazlowski, Madeleine J. Weingarten, John M. Williams, Kevin A. Yuh. sc 2021: 1 [doi]

Anton: a special-purpose machine that achieves a hundred-fold speedup in biomolecular simulationsDavid E. Shaw. hpdc 2013: 129-130 [doi]

Hierarchical simulation-based verification of Anton, a special-purpose parallel machineJohn P. Grossman, John K. Salmon, Richard C. Ho, Doug Ierardi, Brian Towles, Brannon Batson, Jochen Spengler, Stanley C. Wang, Rolf Mueller, Michael Theobald, Cliff Young, Joseph Gagliardo, Martin M. Deneroff, Ron O. Dror, David E. Shaw. iccd 2008: 340-347 [doi]

High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulationRichard H. Larson, John K. Salmon, Ron O. Dror, Martin M. Deneroff, Cliff Young, John P. Grossman, Yibing Shan, John L. Klepeis, David E. Shaw. hpca 2008: 331-342 [doi]

The role of cascade, a cycle-based simulation infrastructure, in designing the anton special-purpose supercomputersJ. P. Grossman, Brian Towles, Joseph A. Bank, David E. Shaw. dac 2013: 122 [doi]

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