Abstract is missing.
- PrefaceTao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong. [doi]
- On the Inference of Regulatory Elements, Circuits, and ModulesWen-Hsiung Li. 1 [doi]
- Automating the Search for Lateral Gene TransferMark A. Ragan. 3 [doi]
- Whole Genome Optical MappingMichael S. Waterman. 5 [doi]
- Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype ErrorsDmitry A. Konovalov. 7-16 [doi]
- Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic ApproachPatrick C. H. Ma, Keith C. C. Chan. 17-26 [doi]
- System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis ThalianaC. W. Li, W. C. Chang, B. S. Chen. 27-37 [doi]
- Protein Subcellular Localisation Prediction with WoLF PSORTPaul Horton, Keun-Joon Park, Takeshi Obayashi, Kenta Nakai. 39-48 [doi]
- Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance MatricesPin-Hao Chi, Chi-Ren Shyu. 49-58 [doi]
- RECOMP: A Parsimony-Based Method for Detecting RecombinationDerek A. Ruths, Luay Nakhleh. 59-68 [doi]
- AlignScope: A Visual Mining Tool for Gene Team Finding with Whole Genome AlignmentHee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwan-Gue Cho. 69-78 [doi]
- An Efficient Algorithm for String Motif DiscoveryFrancis Y. L. Chin, Henry C. M. Leung. 79-88 [doi]
- Discriminative Detection of Cis-Acting Regulatory Variation From Location DataYuji Kawada, Yasubumi Sakakibara. 89-98 [doi]
- On the Complexity of Finding Control Strategies for Boolean NetworksTatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng. 99-108 [doi]
- Characterization of Multi-Charge Mass Spectra for Peptide SequencingKet Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner. 109-119 [doi]
- EDAM: An Efficient Clique Discovery Algorithm with Frequency Transformation for Finding MotifsYifei Ma, Guoren Wang, Yongguang Li, Yuhai Zhao. 119-128 [doi]
- A Recursive Method for Solving Haplotype Frequencies in Multiple Loci Linkage AnalysisMichael K. Ng. 129-138 [doi]
- Trends in Codon and Amino Acid Usage in Human Pathogen Tropheryma Whipplei, the only Known Actinobacteria with Reduced GenomeSabyasachi Das, Sandip Paul, Chitra Dutta. 139-148 [doi]
- Consequences of Mutation, Selection, and Physico-Chemical Properties of Encoded Proteins on Synonymous Codon Usage in AdenovirusesSandip Paul, Sabyasachi Das, Chitra Dutta. 149-158 [doi]
- Microarray Missing Value Imputation by Iterated Local Least SquaresZhipeng Cai, Maysam Heydari, Guohui Lin. 159-168 [doi]
- Property-Dependent Analysis of Aligned Proteins from Two Or More PopulationsSteinar Thorvaldsen, Elinor Ytterstad, Tor Flå. 169-178 [doi]
- A Generalized Output-Coding Scheme with SVM for Multiclass Microarray ClassificationLi Shen, Eng Chong Tan. 179-186 [doi]
- Techniques for Assessing Phylogenetic Branch Support: A Performance StudyDerek A. Ruths, Luay Nakhleh. 187-196 [doi]
- Analyzing Inconsistency Toward Enhancing Integration of Biological Molecular DatabasesYi-Ping Phoebe Chen, Qingfeng Chen. 197-206 [doi]
- A Novel Approach for Structured Consensus Motif Inference Under Specificity and Quorum ConstraintsChristine Sinoquet. 207-216 [doi]
- A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological DataChristopher James Langmead. 217-226 [doi]
- Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics ApproachMarcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai. 227-236 [doi]
- A New Neural Network for B-Turn Prediction: the Effect of Site-Specific Amino Acid PreferenceZhong-Ru Xie, Ming-Jing Hwang. 237-246 [doi]
- Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed GenesShao-Shan Huang, Debra L. Fulton, David J. Arenillas, Paul Perco, Shannan J. Ho Sui, James R. Mortimer, Wyeth W. Wasserman. 247-256 [doi]
- A Knowledge-Based Approach to Protein Local Structure PredictionChing-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu. 257-266 [doi]
- Identification of MicroRNA Precursors via SVMLiang Huai Yang, Wynne Hsu, Mong-Li Lee, Limsoon Wong. 267-276 [doi]
- Genome Wide Computational Analysis of Small Nuclear RNA Genes for Oryza Sativa (Indica and Japonica)M. Shashikanth, A. Snethalatharani, S. K. Mubarak, K. Ulaganathan. 277-286 [doi]
- Resolving the Gene Tree and Species Tree Problem by Phylogenetic MiningXiaoxu Han. 287-296 [doi]
- Characterization of the Existence of Galled-Tree NetworksJán Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta. 297-306 [doi]
- Semi-Supervised Threshold Queries on Pharmacogenomics Time SequencesJohannes Aßfalg, Hans-Peter Kriegel, Peer Kröger, Peter Kunath, Alexey Pryakhin, Matthias Renz. 307-316 [doi]
- Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear RegressionK. Arun, Christopher James Langmead. 317-326 [doi]
- ONBRIRES: Ontology-Based Biological Relation Extraction SystemMinlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li. 327-336 [doi]
- A More Accurate and Efficient Whole Genome PhylogenyP. Y. Chan, Tak Wah Lam, Siu-Ming Yiu. 337-352 [doi]
- Gene Expression Data Clustering Based on Local Similarity CombinationDe Pan, Fei Wang. 353-362 [doi]