Abstract is missing.
- PrefaceDavid Sankoff, Lusheng Wang, Francis Chin. [doi]
- Exploring Genomes of Distantly Related MammalsJennifer A. Marshall Graves. 1 [doi]
- Bugs, Guts and Fat - A Systems Approach to the Metabolic Axis of Evil Joseph H. Nadeau. 3 [doi]
- Protein Identification via Spectral Networks AnalysisPavel A. Pevzner. 5 [doi]
- etagenome Analysis using MeganDaniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster. 7-16 [doi]
- Algorithmic Approaches to Selecting Control Clones in DNA Array Hybridization ExperimentsQi Fu, Elizabeth Bent, James Borneman, Marek Chrobak, Neal E. Young. 17-26 [doi]
- Subtle Motif Discovery for Detection of DNA Regulatory SitesMatteo Comin, Laxmi Parida. 27-36 [doi]
- An Effective Promoter Detection Method using the Adaboost AlgorithmXudong Xie, Shuanhu Wu, Kin-Man Lam, Hong Yan. 37-46 [doi]
- A New Strategy of Geometrical Biclustering for Microarray Data AnalysisHongya Zhao, Alan Wee-Chung Liew, Hong Yan. 47-56 [doi]
- Using Formal Concept Analysis for Microarray Data ComparisonV. Choi, Y. Huang, Vy Lam, D. Potter, Reinhard C. Laubenbacher, Karen Duca. 57-66 [doi]
- An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression DataSara C. Madeira, Arlindo L. Oliveira. 67-80 [doi]
- Selecting Genes with Dissimilar Discrimination Strength for Sample Class PredictionZhipeng Cai, Randy Goebel, Mohammad R. Salavatipour, Yi Shi, Lizhe Xu, Guohui Lin. 81-90 [doi]
- Computing the All-Pairs Quartet Distance on a Set of Evolutionary TreesM. Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg. 91-100 [doi]
- Computing the Quartet Distance Between Evolutionary Trees of Bounded DegreeM. Stissing, Christian N. S. Pedersen, Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg. 101-110 [doi]
- A Global Maximum Likelihood Super-Quartet Phylogeny MethodPinghao Wang, Bing Bing Zhou, Monther Tarawneh, Daniel Chu, Chen Wang, Albert Y. Zomaya, Richard P. Brent. 111-120 [doi]
- A Randomized Algorithm for Comparing Sets of Phylogenetic TreesSeung-Jin Sul, Tiffani L. Williams. 121-130 [doi]
- Protein Structure-Structure Alignment with Discrete Fr echet DistanceMinghui Jiang, Ying Xu, Binhai Zhu. 131-141 [doi]
- Deriving Protein Structure Topology from the Helix Skeletion in Low Resolution Density Map using RosettaYonggang Lu, Jing He, Charlie E. M. Strauss. 143-151 [doi]
- Fitting Protein Chains to Cubic Lattice is NP-CompleteJán Manuch, Daya Ram Gaur. 153-164 [doi]
- Inferring a Chemical Structure from a Feature Vector Based on Frequency of Labeled Paths and Small FragmentsTatsuya Akutsu, Daiji Fukagawa. 165-174 [doi]
- Exact and Heuristic Approaches for Identifying Disease-Associated SNP MotifsGaofeng Huang, Peter Jeavons, Dominic Kwiatkowski. 175-184 [doi]
- Genotype-Based Case-Control Analysis, Violation of Hardy-Weinberg Equilibrium, and Phase DiagramsYoung Ju Suh, Wentian Li. 185-194 [doi]
- A Probabilistic Method to Identify Compensatory Substitutions for Pathogenic MutationsB. C. Easton, A. V. Isaev, Gavin A. Huttley, Peter Maxwell. 195-204 [doi]
- Exploring Genome Rearrangements using Virtual HybridizationM. Belcaid, Anne Bergeron, Annie Chateau, Cedric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette. 205-214 [doi]
- Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome ComparisonNarayanan Raghupathy, Rose Hoberman, Dannie Durand. 215-225 [doi]
- The Distance Between Randomly Constructed GenomesWei Xu. 227-236 [doi]
- Computing the Breakpoint Distance between Partially Ordered GenomesZheng Fu, Tao Jiang. 237-246 [doi]
- Inferring Gene Regulatory Networks by Machine Learning MethodsJochen Supper, Holger Fröhlich, Christian Spieth, Andreas Dräger, Andreas Zell. 247-256 [doi]
- A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of GraphsMorihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi. 257-266 [doi]
- Gene Regulatory Network Inference via Regression Based Topological RefinementJochen Supper, Holger Fröhlich, Andreas Zell. 267-276 [doi]
- Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway DetectionFalk Hüffner, Sebastian Wernicke, Thomas Zichner. 277-286 [doi]
- De Novo Peptide Sequencing for Mass Spectra Based on Multi-Charge Strong TagsKang Ning, Ket Fah Chong, Hon Wai Leong. 287-296 [doi]
- Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass SpectrometryBaozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie. 297-306 [doi]
- Semi-supervised Pattern Learning for Extracting Relations from Bioscience TextsShilin Ding, Minlie Huang, Xiaoyan Zhu. 307-316 [doi]
- Flow Model of the Protein-protein Interaction Network for Finding Credible InteractionsKinya Okada, Kiyoshi Asai, Masanori Arita. 317-326 [doi]
- All Hits All The Time: Parameter Free Calculation of Seed SensitivityDenise Y. F. Mak, Gary Benson. 327-340 [doi]
- Fast Structural Similarity Search Based on Topology String MatchingSung-Hee Park, David Gilbert, Keun Ho Ryu. 341-351 [doi]
- Simple and Fast Alignment of Metabolic Pathways by Exploiting Local DiversitySebastian Wernicke, Florian Rasche. 353-362 [doi]
- Combining N-grams and Alignment in G-protein Coupling Specificity PredictionBetty Yee Man Cheng, Jaime G. Carbonell. 363-372 [doi]