Table of Contents

• Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via ILPPaola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Mauricio Soto. 1-10 [doi]
• A Compatibility Approach to Identify Recombination Breakpoints in Bacterial and Viral GenomesYi-Pin Lai, Thomas R. Ioerger. 11-20 [doi]
• Phylogenetic Tree based Method for Uncovering Co-mutational Site-pairs in Influenza VirusesFransiskus Xaverius Ivan, Xinrui Zhou, Akhila Deshpande, Rui Yin, Jie Zheng, Chee Keong Kwoh. 21-26 [doi]
• Mapping Free Text into MedDRA by Natural Language Processing: A Modular Approach in Designing and Evaluating Software ExtensionsMargherita Zorzi, Carlo Combi, Gabriele Pozzani, Ugo Moretti. 27-35 [doi]
• Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical LiteratureYanshan Wang, Sijia Liu, Majid Rastegar-Mojarad, Liwei Wang, Feichen Shen, Fei Liu, Hongfang Liu. 36-43 [doi]
• Leveraging Sentiment Analysis for Classifying Patient ComplaintsAdel M. ElMessiry, Zhe Zhang, William O. Cooper, Thomas F. Catron, Jan Karrass, Munindar P. Singh. 44-51 [doi]
• Identifying Harm Events in Clinical Care through Medical NarrativesArman Cohan, Allan Fong, Raj M. Ratwani, Nazli Goharian. 52-59 [doi]
• GOstruct 2.0: Automated Protein Function Prediction for Annotated ProteinsIndika Kahanda, Asa Ben-Hur. 60-66 [doi]
• Identification and Prediction of Intrinsically Disordered Regions in Proteins Using n-gramsMauricio Oberti, Iosif I. Vaisman. 67-72 [doi]
• Deep Recurrent Conditional Random Field Network for Protein Secondary PredictionAlexander Rosenberg Johansen, Casper Kaae Sønderby, Søren Kaae Sønderby, Ole Winther. 73-78 [doi]
• CERENKOV: Computational Elucidation of the Regulatory Noncoding VariomeYao Yao, Zheng Liu, Satpreet Singh, Qi Wei, Stephen A. Ramsey. 79-88 [doi]
• Exploring Frequented Regions in Pan-Genomic GraphsAlan Cleary, Indika Kahanda, Brendan Mumey, Joann Mudge, Thiruvarangan Ramaraj. 89-97 [doi]
• Bayesian Hyperparameter Optimization for Machine Learning Based eQTL AnalysisAndrew Quitadamo, James Johnson, Xinghua Shi. 98-106 [doi]
• Coal-Miner: A Statistical Method for GWA Studies of Quantitative Traits with Complex Evolutionary OriginsHussein A. Hejase, Natalie Vande Pol, Gregory M. Bonito, Patrick P. Edger, Kevin J. Liu. 107-114 [doi]
• Learning Deep Representations from Heterogeneous Patient Data for Predictive DiagnosisChongyu Zhou, Yao Jia, Mehul Motani, Jingwei Chew. 115-123 [doi]
• Winnow: Interactive Visualization of Temporal Changes in Multidimensional Clinical DataHsueh-Chien Cheng, Rainer von Coelln, Ann L. Gruber-Baldini, Lisa M. Shulman, Amitabh Varshney. 124-133 [doi]
• Associating Genomics and Clinical Information by Means of Semantic Based RankingFrancesca Cristiano, Giuseppe Tradigo, Pierangelo Veltri. 134-141 [doi]
• Tailoring Training for Obese Individuals with Case-Based ReasoningFabiana Lorenzi, Rodrigo G. da Rosa, Alessandra Peres, Gilson Pires Dorneles, André Peres, Francesco Ricci 0001. 142-147 [doi]
• SparkGA: A Spark Framework for Cost Effective, Fast and Accurate DNA Analysis at ScaleHamid Mushtaq, Frank Liu, Carlos Costa, Gang Liu, Peter Hofstee, Zaid Al-Ars. 148-157 [doi]
• Fast and Highly Scalable Bayesian MDP on a GPU PlatformHe Zhou, Sunil P. Khatri, Jiang Hu, Frank Liu, Cliff C. N. Sze. 158-167 [doi]
• Inferring Microbial Interactions from Metagenomic Time-series Using Prior Biological KnowledgeChieh Lo, Radu Marculescu. 168-177 [doi]
• Secure Cloud Computing for Pairwise Sequence AlignmentSergio Salinas, Pan Li 0001. 178-183 [doi]
• Rich Chromatin Structure Prediction from Hi-C DataLaraib Malik, Robert Patro. 184-193 [doi]
• Cophenetic Median Trees Under the Manhattan DistanceAlexey Markin, Oliver Eulenstein. 194-202 [doi]
• DeepCCI: End-to-end Deep Learning for Chemical-Chemical Interaction PredictionSunyoung Kwon, Sungroh Yoon. 203-212 [doi]
• A Multi-view Deep Learning Method for Epileptic Seizure Detection using Short-time Fourier TransformYe Yuan, Guangxu Xun, Kebin Jia, Aidong Zhang. 213-222 [doi]
• TUCUXI: An Intelligent System for Personalized Medicine from Individualization of Treatments to Research Databases and BackAlevtina Dubovitskaya, Thierry Buclin, Michael Ignaz Schumacher, Karl Aberer, Yann Thoma. 223-232 [doi]
• Interpretable Predictions of Clinical Outcomes with An Attention-based Recurrent Neural NetworkYing Sha, May D. Wang. 233-240 [doi]
• Confused or not Confused?: Disentangling Brain Activity from EEG Data Using Bidirectional LSTM Recurrent Neural NetworksZhaoheng Ni, Ahmet Cem Yuksel, Xiuyan Ni, Michael I. Mandel, Lei Xie. 241-246 [doi]
• Predicting the Effect of Point Mutations on Protein Structural StabilityRoshanak Farhoodi, Max Shelbourne, Rebecca Hsieh, Nurit Haspel, Brian Hutchinson, Filip Jagodzinski. 247-252 [doi]
• Synthesizing Species Trees from Unrooted Gene Trees: A Parameterized ApproachJucheol Moon, Oliver Eulenstein. 253-262 [doi]
• Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mersChelsea J.-T. Ju, Ruirui Li, Zhengliang Wu, Jyun-Yu Jiang, Zhao Yang, Wei Wang. 263-272 [doi]
• A Sparse Latent Regression Approach for Integrative Analysis of Glycomic and Glycotranscriptomic DataXuefu Wang, Sujun Li, Wenjing Peng, Yehia Mechref, Haixu Tang. 273-278 [doi]
• Use of Structural Properties of Underlying Graphs in Pathway Enrichment Analysis of Genomic DataPourya Naderi Yeganeh, M. Taghi Mostafavi. 279-284 [doi]
• Seq2seq Fingerprint: An Unsupervised Deep Molecular Embedding for Drug DiscoveryZheng Xu 0005, Sheng Wang, Feiyun Zhu, JunZhou Huang. 285-294 [doi]
• Detection of Differential Abundance Intervals in Longitudinal Metagenomic Data Using Negative Binomial Smoothing Spline ANOVAAhmed A. Metwally, Patricia W. Finn, Yang Dai, David L. Perkins. 295-304 [doi]
• Cell Neighbor Determination in the Metazoan Embryo SystemZi Wang, Dali Wang, Husheng Li, Zhirong Bao. 305-312 [doi]
• Predictive and Comparative Network Analysis of the Gut Microbiota in Type 2 DiabetesMostafa Abbas, Yasser El-Manzalawy. 313-320 [doi]
• Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human ProteinsLu Zhu, Martin Ester. 321-329 [doi]
• Differential Community Detection in Paired Biological NetworksRaghvendra Mall, Ehsan Ullah, Khalid Kunji, Fulvio D'Angelo, Halima Bensmail, Michele Ceccarelli. 330-339 [doi]
• TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and RankingHuey-Eng Chua, Sourav S. Bhowmick, Lisa Tucker-Kellogg. 340-345 [doi]
• Coxiella burnetiiZhila Esna Ashari Esfahani, Kelly A. Brayton, Shira L. Broschat. 346-351 [doi]
• Knowledge Rich Natural Language Queries over Structured Biological DatabasesHasan M. Jamil. 352-361 [doi]
• Discovering Inconsistencies in PubMed Abstracts through Ontology-Based Information ExtractionNisansa de Silva, Dejing Dou, Jingshan Huang. 362-371 [doi]
• TRuML: A Translator for Rule-Based Modeling LanguagesRyan Suderman, William S. Hlavacek. 372-377 [doi]
• HEMnet: Integration of Electronic Medical Records with Molecular Interaction Networks and Domain Knowledge for Survival AnalysisEdward W. Huang, Sheng Wang, Bingxue Li, Ran Zhang, Baoyan Liu, Runshun Zhang, Jie Liu, Xuezhong Zhou, Hongsheng Lin, ChengXiang Zhai. 378-387 [doi]
• A Novel Approach for Classifying Gene Expression Data using Topic ModelingSoon Jye Kho, Hima Bindu Yalamanchili, Michael L. Raymer, Amit P. Sheth. 388-393 [doi]
• Differential Compound Prioritization via Bi-Directional Selectivity Push with PowerJunfeng Liu, Xia Ning. 394-399 [doi]
• Understanding Sequence Conservation With Deep LearningYi Li, Daniel Quang, Xiaohui Xie. 400-406 [doi]
• SeqyClean: A Pipeline for High-throughput Sequence Data PreprocessingIlya Y. Zhbannikov, Samuel S. Hunter, James A. Foster, Matthew L. Settles. 407-416 [doi]
• Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics AnalysesNagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru. 417-424 [doi]
• de Bruijn Graph Construction for Multiple K-mersKanak Mahadik, Christopher Wright, Milind Kulkarni 0001, Saurabh Bagchi, Somali Chaterji. 425-431 [doi]
• Co-MEAL: Cost-Optimal Multi-Expert Active Learning Architecture for Mobile Health MonitoringRamyar Saeedi, Keyvan Sasani, Assefaw Hadish Gebremedhin. 432-441 [doi]
• Antidote Application: An Educational System for Treatment of Common Toxin OverdoseJon B. Long, Yingyuan Zhang, Vladimir Brusic, Lou Chitkushev, Guanglan Zhang. 442-448 [doi]
• Automated Off-label Drug Use Detection from User Generated ContentMengnan Zhao, Christopher C. Yang. 449-454 [doi]
• Neurospora Exhibit Biologically Relevant Driven and Damped Harmonic OscillationsHannah De Los Santos, Emily J. Collins, Jennifer M. Hurley, Kristin P. Bennett. 455-463 [doi]
• Hybrid ODE/SSA Model of the Budding Yeast Cell Cycle Control Mechanism with Mutant Case StudyMansooreh Ahmadian, Shuo Wang, John J. Tyson, Young Cao. 464-473 [doi]
• RBFNN-based Modelling and Analysis for the Signal Reconstruction of Peripheral Nerve TissueQichun Zhang, Francisco Sepulveda. 474-479 [doi]
• Reverse Engineering Gene Networks: A Comparative Study at Genome-scaleSriram P. Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, Srinivas Aluru. 480-490 [doi]
• Unsupervised Multi-View Feature Selection for Tumor Subtype IdentificationSultan Imangaliyev, Evgeni Levin. 491-499 [doi]
• Computational Intractability Generates the Topology of Biological NetworksAli Atiia, Corbin Hopper, Jérôme Waldispühl. 500-509 [doi]
• A Flexible and Robust Multi-Source Learning Algorithm for Drug RepositioningHuiyuan Chen, Jing Li. 510-515 [doi]
• Tensor-Factorization-Based Phenotyping using Group Information: Case Study on the Efficacy of StatinsJingyun Choi, Yejin Kim, Hun-Sung Kim, In-Young Choi, Hwanjo Yu. 516-525 [doi]
• Infer Cause of Death for Population Health Using Convolutional Neural NetworkHang Wu, May D. Wang. 526-535 [doi]
• Automated Breast Cancer Diagnosis Using Deep Learning and Region of Interest Detection (BC-DROID)Richard Platania, Shayan Shams, Seungwon Yang, Jian Zhang, Kisung Lee, Seung-Jong Park. 536-543 [doi]
• A Physiological Thermal Regulation Model with Application to the Diagnosis of Diabetic Peripheral NeuropathyViktor Chekh, Peter Soliz, Mark R. Burge, Shuang Luan. 544-549 [doi]
• An Out-of-Core GPU based Dimensionality Reduction Algorithm for Big Mass Spectrometry Data and Its Application in Bottom-up ProteomicsMuaaz Gul Awan, Fahad Saeed. 550-555 [doi]
• Building Applications for Interactive Data Exploration in Systems BiologyBjørn Fjukstad, Vanessa Dumeaux, Karina Standahl Olsen, Eiliv Lund, Michael Hallett, Lars Ailo Bongo. 556-561 [doi]
• Mining Faces from Biomedical Literature using Deep LearningMitchell Dawson, Andrew Zisserman, Christoffer Nellåker. 562-567 [doi]
• A Correlation Network Model Utilizing Gait Parameters for Evaluating Health LevelsElham Rastegari, Hesham Ali. 568-574 [doi]
• Study of Antidepressant Molecular Structure Leading to Safer DosingMeera Garg. 575 [doi]
• Supervised Machine Learning Approaches Predict and Characterize Nanomaterial Exposures: MWCNT Markers in Lung Lavage FluidNaveena Yanamala, Marlene S. Orandle, Vamsi K. Kodali, Lindsey M. Bishop, Patti C. Zeidler-Erdely, Jenny R. Roberts, Vincent Castranova, Aaron D. Erdely. 576 [doi]
• Prokaryotic Autolysin Database ConstructionBrandon A. Saiz, Padmanabhan Mahadevan. 578 [doi]
• Arabidopsis ThalianaBasma Abdelkarim, Vincent Maranda, Guy Drouin. 579 [doi]
• Super-enhancer Dynamics Throughout MyogenesisBasma Abdelkarim, Theodore J. Perkins. 580 [doi]
• Varsimlab: A Docker-based Pipeline to Automatically Synthesize Short Reads with Genomic AberrationsAbdelrahman Hosny, Fatima Zare, Sheida Nabavi. 581 [doi]
• An Advanced Workflow for Metabolite AnnotationNeda Hassanpour, Nicholas Alden, Kyongbum Lee, Soha Hassoun. 582 [doi]
• Development of a Polymer-Theoretic Approach to Describing Constraints on Reactions Between Antipeptide Antibodies and Intrinsically Disordered Peptide Antigens: Implications for B-Cell Epitope PredictionSalvador Eugenio C. Caoili. 583 [doi]
• Development of Nicotinic Acetylcholine Receptor nAChR α7 Binding Activity Prediction Model: Coupling Machine Learning with Competitive Molecular DockingHuixiao Hong, Carmine Leggett, Suguna Sakkiah. 584 [doi]
• Automated Next Generation Sequencing Bioinformatics Pipelines for Pathogen Discovery and SurveillanceMargaret Okomo-Adhiambo, Edward Ramos, Reagan Kelly, Yatish Jain, Roman L. Tatusov, Anna Montmayeur, Gregory Doho, Rachel L. Marine, Terry Fei Fan Ng, Adam Retchless, Steve Oberste, Paul Rota, Xin Wang, Agha N. Khan. 585 [doi]
• Skip-Gram Models: Extended AbstractS. M. Ashiqul Islam, Christopher Michel Kearney, Ankan Choudhury, Erich J. Baker. 586 [doi]
• Self-Tuning Spectral Clustering for Full-length Viral Quasispecies Reconstruction with PacBio Long ReadsXiaoli Jiao, Hiromi Imamichi, Tauseef Rehman, Rishub Nahar, Robin L. Dewar, H. Clifford Lane, Tomozumi Imamichi, Brad T. Sherman. 587 [doi]
• Best Setting of Model Parameters in Applying Topic Modeling on Textual DocumentsWen Zou, Weizhong Zhao, James J. Chen, Roger Perkins. 588 [doi]
• Neopepsee: Accurate Genome-level Prediction of Neoantigens by Harnessing Sequence and Amino Acid Immunogenicity InformationSora Kim, Han Sang Kim, Sangwoo Kim. 589 [doi]
• Novel Unsupervised Named Entity Recognition Used in Text Annotation Tool (OntoMate) At Rat Genome DatabaseOmid Ghiasvand, Mary Shimoyama. 590 [doi]
• Bias and Noise Cancellation for Robust Copy Number Variation DetectionFatima Zare, Sardar Ansari, Kayvan Najarian, Sheida Nabavi. 591 [doi]
• Applying Bayesian Changepoint Model and Hierarchical Divisive Model for Detecting Anomalies in Clinical Decision Support Alert FiringSoumi Ray, Adam Wright. 592 [doi]
• Preconditioned Random Forest Regression: Application to Genome-Wide Study for Radiotherapy Toxicity PredictionSangkyu Lee, Sarah Kerns, Barry Rosenstein, Harry Ostrer, Joseph O. Deasy, Jung Hun Oh. 593 [doi]
• Outlier Genes as Biomarkers of Breast Cancer Survivability in Time-Series DataNaveen Mangalakumar, Abed Alkhateeb, Pham Quang Huy, Luis Rueda, Alioune Ngom. 594 [doi]
• Pisces: An Accurate and Versatile Single Sample Somatic and Germline Variant CallerTamsen Dunn, Gwenn Berry, Dorothea Emig-Agius, Yu Jiang, Anita Iyer, Nitin Udar, Michael Strömberg. 595 [doi]
• Nirvana: Clinical Grade Variant AnnotatorMichael Stromberg, Rajat Roy, Julien Lajugie, Yu Jiang, Haochen Li, Elliott H. Margulies. 596 [doi]
• Streptomyces Clavuligerus Constraint-Based Modeling and Gene Expression Analysis for Clavulanic Acid ProductionLeón F. Toro, Laura Pinilla-Mendoza, Rigoberto Ríos-Estepa. 597 [doi]
• Notch Signaling Plays an Important Role in mTEC Specification during Fetal Thymus DevelopmentDong Liu, Anastasia I. Kousa, Simon R. Tomlinson, C. Clare Blackburn. 598 [doi]
• Analysis of 16S Genomic Data using Graphical DatabasesOlivia M. Ahern, Rebecca J. Stevick, Li Yuan, Noah M. Daniels. 599 [doi]
• High Dimensional Ensemble Neuronal Activity Pattern Analysis: Visualization and Wave Detection FocusedVarshini Guddanti, Shawn Horvatic, Jie Zhou, Yujia Hu, Bing Ye. 600 [doi]
• Tumor Neoantigens Derived from RNA Sequencing AnalysisShaojun Tang, Suthee Rapisuwon, Anton Wellstein, Subha Madhavan. 601 [doi]
• Challenges in Prediction of different Cancer Stages using Gene Expression Profile of Cancer PatientsSherry Bhalla, Suresh Sharma, Gajendra Pal Singh Raghava. 602 [doi]
• NGSPipes: Fostering Reproducibility and Scalability in BiosciencesBruno Dantas, Calmenelias Fleitas, Alexandre Almeida, João Forja, Alexandre P. Francisco, José Simão, Cátia Vaz. 603 [doi]
• Dynamic Phylogenetic Inference for Sequence-based Typing DataAlexandre P. Francisco, Marta Nascimento, Cátia Vaz. 604 [doi]
• Classification and Prediction of Antimicrobial Peptides Using N-gram Representation and Machine LearningManal Othman, Sujay Ratna, Anant Tewari, Anthony M. Kang, Katherine Du, Iosif I. Vaisman. 605 [doi]
• Network Analysis Identifies Regulatory Hotspots in Regions of Chromosome InteractionsAnastasiya Belyaeva, Saradha Venkatachalapathy, Mallika Nagarajan, G. V. Shivashankar, Caroline Uhler. 606 [doi]
• Machine Learning Model for Identifying Gene Biomarkers for Breast Cancer Treatment SurvivalAshraf Abou Tabl, Abed Alkhateeb, Waguih ElMaraghy, Alioune Ngom. 607 [doi]
• Genome-Wide Association Study (GWAS) for the Infliximab Responsiveness in Korean Inflammatory Bowel Disease PatientsZewon Park, Ko-Woon Choi, Doo-Won Seo, Sunae Ryu, Jong Gu Lee, Woo Yong Oh. 608-609 [doi]
• Integrating Prior Information with Bayesian Feature SelectionAli Foroughi Pour, Lori A. Dalton. 610 [doi]
• An Integrated Reconciliation Framework for Domain, Gene, and Species Level EvolutionLei Li, Mukul S. Bansal. 611 [doi]
• Assessing the Impact of Uncertain Gene Tree Rooting on Phylogenetic Reconciliation Using a Simulation FrameworkSoumya Kundu, Mukul S. Bansal. 612 [doi]
• Overlap Graph Reduction for Genome Assembly using Apache SparkAlexander J. Paul, Dylan Lawrence, Tae-Hyuk Ahn. 613 [doi]
• A Cross-Platform System Architecture for Form Design and Data Analytics for Public HealthBlake Camp, Jaya Mandivarapu, Jay Mehta, Nagashayana Ramamurthy, James Wingo, Anu G. Bourgeois, Xiaojun Cao, Rajshekhar Sunderraman. 614 [doi]
• Deep Residual Nets for Improved Alzheimer's DiagnosisAly Valliani, Ameet Soni. 615 [doi]
• Integrative Sufficient Dimension Reduction Methods for Multi-Omics Data AnalysisYashita Jain, Shanshan Ding. 616 [doi]
• Predicting Breast Cancer Outcome under Different Treatments by Feature Selection ApproachesPham Quang Huy, Luis Rueda, Alioune Ngom. 617 [doi]
• Breaking Ties in Weighted InteractomesIbrahim Youssef, Anna Ritz. 618 [doi]
• Microbiome Dynamics as Predictors of Lung Transplant RejectionAhmed Metwally, Christian Ascoli, Kalista Andropolis, Ravi Ranjan, Yang Dai, Thomas Ferkol, Patricia W. Finn, David Perkins. 619 [doi]
• Analysis of Controls in ChIP-seqAseel Awdeh, Theodore J. Perkins. 620 [doi]
• SeqAnt: Cloud-Based Whole-Genome Annotation and SearchAlex V. Kotlar, Cristina E. Trevino, Michael E. Zwick, David J. Cutler, Thomas S. Wingo. 621 [doi]
• A Tool for Predicting the Dark Side of EnzymesLinfeng Liu, Soha Hassoun. 622 [doi]
• Pathway Enrichment Analysis for Untargeted MetabolomicsVladimir Porokhin, Xinmeng Li, Soha Hassoun. 623 [doi]
• Towards the Design of Matrix Metalloproteinases (MMP) Antibody SequencesXinmeng Li, James Van Deventer, Soha Hassoun. 624 [doi]
• ProSol DB: A Protein Solubility DatabaseSara A. Amin, Venkatesh Endalur Gopinarayanan, Nikhil U. Nair, Soha Hassoun. 625 [doi]
• Building a Molecular Taxonomy of DiseaseJisoo Park, Benjamin J. Hescott, Donna K. Slonim. 626 [doi]
• Network Analysis of Correlated Mutations in InfluenzaUday Yallapragada, Iosif I. Vaisman. 627 [doi]
• ACM-BCB '17 Tutorial: Robotics-inspired Algorithms for Modeling Protein Structures and MotionsKevin Molloy, David Morris, Amarda Shehu. 628 [doi]
• Computational Modeling of Protein-RNA InteractionsYaron Orenstein. 629 [doi]
• Stochastic Process Model and Its Applications to Analysis of Longitudinal DataIlya Y. Zhbannikov, Konstantin G. Arbeev. 630 [doi]
• Analyzing the eICU Collaborative Research DatabaseAlistair E. W. Johnson, Tom J. Pollard, Leo A. Celi, Roger G. Mark. 631 [doi]
• Instrumenting the Health Care Enterprise for Discovery in the Course of Clinical CareShawn Murphy. 632 [doi]
• Challenges of Drug DesignDagmar Ringe. 633 [doi]
• Genome-scale Estimation of the Tree of LifeTandy J. Warnow. 634 [doi]
• Highlights Talks at ACM BCB 2017Amarda Shehu, Tamer Kahveci, Giuseppe Pozzi. 635 [doi]
• Model-based Transcriptome EngineeringMichael R. Brent. 636 [doi]
• Analysis of Single Cells on a Pseudotime Scale along Postnatal Pancreatic Beta Cell DevelopmentFrancesca Mulas, Chun Zeng, Yinghui Sui, Tiffany Guan, Nathanael Miller, Yuliang Tan, Fenfen Liu, Wen Jin, Andrea C. Carrano, Mark O. Huising, Orian Shirihai, Gene W. Yeo, Maike Sander. 637 [doi]
• Drug Response Prediction as a Link Prediction ProblemZachary Stanfield, Mustafa Coskun, Mehmet Koyutürk. 638 [doi]
• Fast, Clash-Free RNA Conformational Morphing using Molecular JunctionsA. Heliou, Dominik Budday, Rasmus Fonseca, Henry van den Bedem. 639 [doi]
• Network-based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software PackageAmanda J. Kedaigle. 640 [doi]
• 3D Genome Structure Modeling by Lorentzian Objective FunctionTuan Trieu, Jianlin Cheng. 641 [doi]
• Folding Large Proteins by Ultra-Deep LearningJinbo Xu. 642 [doi]
• The 2017 Computational Structural Bioinformatics Workshop: CSBW 2017Nurit Haspel, Amarda Shehu, Kevin Molloy. 643 [doi]
• Computational Modeling of pH-dependent gp120-CD4 Interactions in Founder and Chronic HIV StrainsJonathan Howton, Joshua L. Phillips. 644-649 [doi]
• Analysis of ß-strand Twist from the 3-dimensional Image of a ProteinTunazzina Islam, Michael Poteat, Jing He. 650-654 [doi]
• in silicoErik Andersson, Filip Jagodzinski. 655-660 [doi]
• String-Based Models for Predicting RNA-Protein InteractionDonald A. Adjeroh, Maen Allaga, Jun Tan, Jie Lin, Yue Jiang, Ahmed Abbasi, Xiaobo Zhou. 661-666 [doi]
• Ranking Protein-Protein Binding Using Evolutionary Information and Machine LearningRoshanak Farhoodi, Bahar Akbal-Delibas, Nurit Haspel. 667-672 [doi]
• Evolving Conformation Paths to Model Protein Structural TransitionsEmmanuel Sapin, Kenneth A. De Jong, Amarda Shehu. 673-678 [doi]
• Statistical Analysis of Computed Energy Landscapes to Understand Dysfunction in Pathogenic Protein VariantsWanli Qiao, Tatiana Maximova, Erion Plaku, Amarda Shehu. 679-684 [doi]
• Automated Protein Chain Isolation from 3D Cryo-EM Data and Volume Comparison ToolMichael Nissenson, Dong-Si. 685-690 [doi]
• A Graph Based Method for the Prediction of Backbone Trace from Cryo-EM Density MapsPeter Collins, Dong-Si. 691-697 [doi]
• Investigating Rigidity Properties of Protein CavitiesStephanie Mason, Tim Woods, Brian Chen, Filip Jagodzinski. 698-703 [doi]
• Geometric Sampling Framework for Exploring Molecular Walker Energetics and DynamicsBruna Jacobson, Jon Christian L. David, Mitchell C. Malone, Kasra Manavi, Susan R. Atlas, Lydia Tapia. 704-709 [doi]
• Gaussian Mixture Models with Constrained Flexibility for Fitting Tomographic Tilt SeriesKasra Manavi, Sahba Tashakkori, Lydia Tapia. 710-715 [doi]
• Geometry Analysis for Protein Secondary Structures Matching ProblemKamal Al-Nasr, Feras Yousef, Christopher Jones, Ruba Jebril. 716-721 [doi]
• ParBio'17: 6th Workshop on Parallel and Cloud-based Bioinformatics and BiomedicineMario Cannataro, John A. Springer. 722 [doi]
• GPU-PCC: A GPU Based Technique to Compute Pairwise Pearson's Correlation Coefficients for Big fMRI DataTaban Eslami, Muaaz Gul Awan, Fahad Saeed. 723-728 [doi]
• Ensemble Convolution Neural Network with a Simple Voting Method for Lung Tumor DetectionAllison M. Rossetto, Wenjin Zhou. 729-734 [doi]
• Fuzzy Prediction of Incipient Alzheimer's Disease cases from Mild Cognitive Impaired casesOriehi Edisemi Destiny Anyaiwe, Gautam B. Singh. 735-739 [doi]
• Using GenotypeAnalytics to Analyze Pharmacogenomic DatasetsGiuseppe Agapito, Pietro Hiram Guzzi, Mario Cannataro. 740-743 [doi]
• Discovery of Regular Domains in Large DNA Data SetsFrancesca Bertacchini, Eleonora Bilotta, Pietro Pantano. 744-749 [doi]
• CNB-MAC'17: The Fourth International Workshop on Computational Network Biology: Modeling, Analysis, and ControlByung-Jun Yoon, Xiaoning Qian, Tamer Kahveci. 750 [doi]
• Bayesian Graphical Models for Computational Network BiologyYang Ni, Peter Müller 0003, Lin Wei, Yuan Ji. 751 [doi]
• Detangling PPI Networks to Uncover Functionally Meaningful ClustersSarah Hall-Swan, Jake Crawford, Rebecca Newman, Lenore J. Cowen. 752-753 [doi]
• SMILE: A Novel Procedure for Subcellular Module Identification with Localization ExpansionLixin Cheng, Pengfei Liu, Kwong-Sak Leung. 754-755 [doi]
• Overlapping Functional Modules Detection in PPI Network with Pairwise Constrained Nonnegative Matrix Tri-FactorizationGuangming Liu, Bianfang Chai, Kuo Yang, Xuezhong Zhou, Jian Yu. 756-757 [doi]
• Heuristic Algorithms for Feature Selection under Bayesian Models with Block-diagonal Covariance StructureAli Foroughi Pour, Lori A. Dalton. 758-759 [doi]
• Feature Selection with Interactions in Logistic Regression Models using Multivariate Synergies for a GWAS ApplicationEaston Li Xu, Xiaoning Qian, Qilian Yu, Han Zhang, Shuguang Cui. 760-761 [doi]
• Simulating Variance Heterogeneity in Quantitative Genome Wide Association StudiesAhmad Al Kawam, Mustafa Alshawaqfeh, James Cai, Erchin Serpedin, Aniruddha Datta. 762-763 [doi]
• Sparse Tensor Decomposition for Haplotype Assembly of Diploids and PolyploidsAbolfazl Hashemi, Banghua Zhu, Haris Vikalo. 764-765 [doi]
• Intrinsically Bayesian Robust Classifier for Single-Cell Gene Expression Time Series in Gene Regulatory NetworksAlireza Karbalayghareh, Ulisses Braga-Neto, Edward R. Dougherty. 766-767 [doi]
• Constraints On Signaling Networks Logic Reveal Functional Subgraphs On Multiple Myeloma OMIC DataBertrand Miannay, Stéphane Minvielle, Olivier Roux, Florence Magrangeas, Carito Guziolowski. 768-769 [doi]
• Protein-Protein Interaction Extraction Using Attention-Based Convolution Neural NetworksHao Zhang, Mary Qu Yang, Xiaoyue Feng, William Yang, Weida Tong, Renchu Guan. 770-771 [doi]
• Investigation of Model Stacking for Drug Sensitivity PredictionKevin Matlock, Carlos De Niz, Raziur Rahman, Souparno Ghosh, Ranadip Pal. 772 [doi]
• A Bayesian Approach to Determine the Composition of Heterogeneous Cancer TissueAshish Katiyar, Anwoy Kumar Mohanty, Chao Sima, Jianping Hua, Rosana Lopes, Aniruddha Datta, Michael L. Bittner. 773-774 [doi]
• CAME 2017: 6th Workshop on Computational Advances in Molecular EpidemiologyYury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky. 775 [doi]
• A Workshop on Microbiomics, Metagenomics, and MetabolomicsSoha Hassoun, Curtis Huttenhower. 776 [doi]