Abstract is missing.
- Target Gene Prediction of Transcription Factor Using a New Neighborhood-regularized Tri-factorization One-class Collaborative Filtering AlgorithmHansaim Lim, Lei Xie. 1-10 [doi]
- A Decomposition-based Approach towards the Control of Boolean NetworksSoumya Paul, Cui Su, Jun Pang, Andrzej Mizera. 11-20 [doi]
- ANCA: Alignment-based Network Construction AlgorithmKevin Chow, Ahmet Ay, Rasha Elhesha, Tamer Kahveci. 21-26 [doi]
- Towards Selective-Alignment: Bridging the Accuracy Gap between Alignment-Based and Alignment-Free Transcript QuantificationHirak Sarkar, Mohsen Zakeri, Laraib Malik, Robert Patro. 27-36 [doi]
- ULTRA: A Model Based Tool to Detect Tandem RepeatsDaniel Olson, Travis J. Wheeler. 37-46 [doi]
- Measuring the Mappability Spectrum of Reference Genome AssembliesZachary D. Stephens, Ravishankar K. Iyer. 47-52 [doi]
- Efficient Synthesis of Mutants Using Genetic CrossesAditya Pratapa, Amogh P. Jalihal, S. S. Ravi, T. M. Murali. 53-62 [doi]
- A Consensus Approach to Infer Tumor Evolutionary HistoriesKiya Govek, Camden Sikes, Layla Oesper. 63-72 [doi]
- Phenotyping Immune Cells in Tumor and Healthy Tissue Using Flow Cytometry DataYe Chen, Ryan D. Calvert, Ariful Azad, Bartek Rajwa, James Fleet, Timothy Ratliff, Alex Pothen. 73-78 [doi]
- TEMPO: Detecting Pathway-Specific Temporal Dysregulation of Gene Expression in DiseaseChristopher Michael Pietras, Faith Ocitti, Donna K. Slonim. 79-88 [doi]
- Deep Learning Based Tumor Type Classification Using Gene Expression DataBoyu Lyu, Anamul Haque. 89-96 [doi]
- A Distributed Constrained Non-negative Matrix Factorization Algorithm for Time-Series Gene Expression DataMatthew Dyer, Julian Dymacek. 97-102 [doi]
- Weakly Supervised Deep Learning for Thoracic Disease Classification and Localization on Chest X-raysChaochao Yan, Jiawen Yao, Ruoyu Li, Zheng Xu 0005, JunZhou Huang. 103-110 [doi]
- XGBoost-Based Instantaneous Drowsiness Detection Framework Using Multitaper Spectral Information of ElectroencephalographyHyun Soo Choi, Siwon Kim, Jung Eun Oh, Jee Eun Yoon, Jung Ah Park, Chang Ho Yun, Sungroh Yoon. 111-121 [doi]
- Bioinformatic Analysis of Nucleotide Cyclase Functional Centers and Development of ACPred WebserverNuo Xu, Changjiang Zhang, Leng Leng Lim, Aloysius Wong. 122-129 [doi]
- Single-cell Clustering Based on Word Embedding and Nonparametric MethodsTianyu Wang, Sheida Nabavi. 130-138 [doi]
- The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in Randomly-Generated Peptide LibrariesTanner D. Jensen, Kristi A. Bresciano, Emma Dallon, M. Stanley Fujimoto, Cole A. Lyman, Enoch Stewart, Joel Griffitts, Mark J. Clement. 139-144 [doi]
- RegMIL: Phenotype Classification from Metagenomic DataMohammad Arifur Rahman, Huzefa Rangwala. 145-154 [doi]
- Detecting Divergent Subpopulations in Phenomics Data using Interesting FlaresMethun Kamruzzaman, Ananth Kalyanaraman, Bala Krishnamoorthy. 155-164 [doi]
- Neuroinformatics and Analysis of Connectomic Alterations Due to Cerebral Microhemorrhages in Geriatric Mild Neurotrauma: Microhemorrhages in Geriatric NeurotraumaAlexander S. Maher, Kenneth A. Rostowsky, Nahian F. Chouwdhury, Andrei Irimia. 165-171 [doi]
- Microbiomarkers Discovery in Inflammatory Bowel Diseases using Network-Based Feature SelectionMostafa Abbas, Thanh Le, Halima Bensmail, Vasant G. Honavar, Yasser El-Manzalawy. 172-177 [doi]
- Improving Validity of Cause of Death on Death CertificatesRyan A. Hoffman, Janani Venugopalan, Li Qu, Hang Wu, May D. Wang. 178-183 [doi]
- CausalTriad: Toward Pseudo Causal Relation Discovery and Hypotheses Generation from Medical Text DataSendong Zhao, Meng Jiang 0001, Ming Liu, Bing Qin 0001, Ting Liu 0001. 184-193 [doi]
- Melanoma Risk Prediction with Structured Electronic Health RecordsAaron N. Richter, Taghi M. Khoshgoftaar. 194-199 [doi]
- Splice-Aware Multiple Sequence Alignment of Protein IsoformsAlex S. Nord, Peter V. Hornbeck, Kaitlin Carey, Travis J. Wheeler. 200-210 [doi]
- Ensemble Voting Schemes that Improve Machine Learning Models for Predicting the Effects of Protein MutationsSarah Gunderson, Filip Jagodzinski. 211-219 [doi]
- Convolutional Neural Networks for Predicting Molecular Binding Affinity to HIV-1 ProteinsPaul Morris, Yahchayil DaSilva, Evan Clark, William Edward Hahn, Elan Barenholtz. 220-225 [doi]
- Cost-Sensitive Deep Active Learning for Epileptic Seizure DetectionXuhui Chen, Jinlong Ji, Tianxi Ji, Pan Li. 226-235 [doi]
- Automated Mouse Organ Segmentation: A Deep Learning Based SolutionNaveen Ashish, Mi-Youn K. Brusniak. 236-243 [doi]
- A Distributed Semi-Supervised Platform for DNase-Seq Data Analytics using Deep Generative Convolutional NetworksShayan Shams, Richard Platania, Joohyun Kim, Jian Zhang, Kisung Lee, Seungwon Yang, Seung-Jong Park. 244-253 [doi]
- DeepAnnotator: Genome Annotation with Deep LearningMohammad Ruhul Amin, Alisa Yurovsky, Yingtao Tian, Steven Skiena. 254-259 [doi]
- On the Minimum Copy Number Generation Problem in Cancer GenomicsQingge Letu, Xiaozhou He, Zhihui Liu, Binhai Zhu. 260-269 [doi]
- Detecting Chromosomal Inversions from Dense SNPs by Combining PCA and Association TestsRonald J. Nowling, Scott J. Emrich. 270-276 [doi]
- Disease Subtyping using Somatic Variant DataSuzan Arslanturk, Sorin Draghici. 277-282 [doi]
- Leveraging Treatment Patterns to Predict Survival of Patients with Advanced Non-Small-Cell Lung CancerKyle Haas, Malika Mahoui, Simone Gupta, Stuart Morton. 283-290 [doi]
- Open Information Extraction with Meta-pattern Discovery in Biomedical LiteratureXuan Wang 0008, Yu Zhang, Qi Li 0012, Yinyin Chen, Jiawei Han 0001. 291-300 [doi]
- What Happens When?: Interpreting Schedule of Activity Tables in Clinical Trial DocumentsMurtaza Dhuliawala, Nicholas Fay, Daniel M. Gruen, Amar Das. 301-306 [doi]
- clustQ: Efficient Protein Decoy Clustering Using Superposition-free Weighted Internal Distance ComparisonsRahul Alapati, Debswapna Bhattacharya. 307-314 [doi]
- Graphic Encoding of Macromolecules for Efficient High-Throughput AnalysisTrilce Estrada, Jeremy Benson, Hector Carrillo-Cabada, Asghar M. Razavi, Michel A. Cuendet, Harel Weinstein, Ewa Deelman, Michela Taufer. 315-324 [doi]
- Hybrid Spectral/Subspace Clustering of Molecular Dynamics SimulationsIvan Syzonenko, Joshua L. Phillips. 325-330 [doi]
- Biomarker Discovery via Optimal Bayesian Feature Filtering for Structured Multiclass DataAli Foroughi Pour, Lori A. Dalton. 331-340 [doi]
- Integration of Cancer Data through Multiple Mixed Graphical ModelChristopher Ma, Tina Gui, Xin Dang, Yixin Chen, Dawn Wilkins. 341-350 [doi]
- TFmeta: A Machine Learning Approach to Uncover Transcription Factors Governing Metabolic ReprogrammingYi Zhang, Xiaofei Zhang, Andrew N. Lane, Teresa W.-M. Fan, Jinze Liu. 351-359 [doi]
- MIA: Multi-cohort Integrated Analysis for Biomarker IdentificationBrian Marks, Nina Hees, Hung Nguyen, Tin Nguyen. 360-365 [doi]
- Phylogenetic Consensus for Exact Median TreesPawel Tabaszewski, Pawel Górecki, Oliver Eulenstein. 366-375 [doi]
- Species Tree and Reconciliation Estimation under a Duplication-Loss-Coalescence ModelPeng Du, Luay Nakhleh. 376-385 [doi]
- An Integer Linear Programming Solution for the Domain-Gene-Species Reconciliation ProblemLei Li, Mukul S. Bansal. 386-397 [doi]
- A Network Science Approach for Determining the Ancestral Phylum of BacteriaEhdieh Khaledian, Assefaw H. Gebremedhin, Kelly A. Brayton, Shira L. Broschat. 398-403 [doi]
- Seq3seq Fingerprint: Towards End-to-end Semi-supervised Deep Drug DiscoveryXiaoyu Zhang, Sheng Wang, Feiyun Zhu, Zheng Xu 0005, Yuhong Wang, JunZhou Huang. 404-413 [doi]
- Identifying Experimental Evidence in Biomedical Abstracts Relevant to Drug-Drug InteractionsGongbo Zhang, Debarati Roychowdhury, Pengyuan Li, Heng-Yi Wu, Shijun Zhang, Lang Li 0001, Hagit Shatkay. 414-418 [doi]
- Feature Selection to Predict Compound's Effect on AgingHafez Eslami Manoochehri, Susmitha Sri Kadiyala, Javad Birjandtalab, Mehrdad Nourani. 419-427 [doi]
- A Practical and Efficient Algorithm for the k-mismatch Shortest Unique Substring Finding ProblemDaniel R. Allen, Sharma V. Thankachan, Bojian Xu. 428-437 [doi]
- KmerEstimate: A Streaming Algorithm for Estimating k-mer Counts with Optimal Space UsageSairam Behera, Sutanu Gayen, Jitender S. Deogun, N. V. Vinodchandran. 438-447 [doi]
- Are Profile Hidden Markov Models Identifiable?Srilakshmi Pattabiraman, Tandy J. Warnow. 448-456 [doi]
- Applying Stochastic Process Model to Imputation of Censored Longitudinal DataIlya Zhbannikov, Konstantin G. Arbeev, Anatoliy I. Yashin. 457-464 [doi]
- Automatic Autism Spectrum Disorder Detection Using Everyday Vocalizations Captured by Smart DevicesYuan Gong, Hasini Yatawatte, Christian Poellabauer, Sandra L. Schneider, Susan Latham. 465-473 [doi]
- Prediction of Clinical Outcomes of Spinal Muscular Atrophy Using Motion Tracking Data and Elastic Net RegressionDavid Chen, Steve Rust, En-Ju D. Lin, Simon Lin, Leslie Nelson, Lindsay Alfano, Linda P. Lowes. 474-481 [doi]
- Cohesion-driven Online Actor-Critic Reinforcement Learning for mHealth InterventionFeiyun Zhu, Peng Liao, Xinliang Zhu, Jiawen Yao, JunZhou Huang. 482-491 [doi]
- Robust Actor-Critic Contextual Bandit for Mobile Health (mHealth) InterventionsFeiyun Zhu, Jun Guo, Ruoyu Li, JunZhou Huang. 492-501 [doi]
- Identification of Non-invasive Cytokine Biomarkers for Polycystic Ovary Syndrome Using Supervised Machine LearningDaniela Silvia Perry, Jeremy Gunawardena, Nicolas M. Orsi. 502 [doi]
- HmmUFOtu: An HMM and Phylogenetic Placement based Ultra-fast Taxonomic Assignment and OTU Picking Tool for Microbiome Amplicon Sequencing StudiesQi Zheng, Jacquelyn Meisel, Casey Bartow-McKenney, Elizabeth A. Grice. 503 [doi]
- TCGA Lung Cancer Analysis PipelineTalip Zengin, Tugba Onal Suzek. 504 [doi]
- Classification of Carbonaceous Nanomaterials based on Patterns of Inflammatory Markers in BAL Fluid and Pathological Outcomes in LungsIshika C. Desai, William Miller, Vamsi K. Kodali, Girija Syamlal, Jenny R. Roberts, Aaron D. Erdely, Naveena Yanamala. 505 [doi]
- Relation Extraction for Protein-protein Interactions Affected by MutationsZiling Fan, Luca Soldaini, Arman Cohan, Nazli Goharian. 506-507 [doi]
- Analysis of Molecular Structure Data]{Systematic Study of Different Design Decisions in Markov Model-based Analysis of Molecular Structure Data: Extended AbstractSharmila Roychoudhury, Amarda Shehu. 508-509 [doi]
- Interpretable Machine Learning Approach Reveals Developmental Gene Expression Biomarkers for Cancer Patient Outcomes at Early StagesAlisha Kamat, Ting Jin, So Yeon Min, Flaminia Talos, Jonas S. Almeida, Daifeng Wang. 510 [doi]
- Expert and Student User Evaluation of Semantic Protocol SearchWeizhong Zhu, Tarrah Kirkpatrick, Josephina Lin, Susan Hmwe. 511-512 [doi]
- Differences in Engagement Among BabyCenter.com Community Forum Contributors: A Pilot StudyAustin Gu, Casey Overby Taylor. 513 [doi]
- A Manifold Learning Based Approach to Reveal the Functional Linkages across Multiple Gene NetworksNam Nguyen, Ian Blaby, Daifeng Wang. 514 [doi]
- Understand Compound Mechanism of Action at a System Biology Scale through Chemical Biology Data Management and AnalysisHuijun Wang, An Chi, Xudong Qiao. 515 [doi]
- Profiling Diverse Chemical Space to Map the Druggable ProteomeHuijun Wang, Francisco Garcia, An Chi, Ivan Cornella Taracido, Anne Mai Wasssermann, Andy Liaw. 516 [doi]
- Services4SNPs: A RESTful Platform for Association Rule Mining and Survival Analysis of Genotyping DataGiuseppe Agapito, Mario Cannataro 0001. 517 [doi]
- Interpreting Negative Data on Antipeptide Paratope Binding to Support Development of B-Cell Epitope Prediction for Vaccine Design and Other Translational ApplicationsSalvador Eugenio C. Caoili. 518 [doi]
- ProSetComp: A Platform for Protein Set ComparisonsErdem Turk, Turkan Arit, Delikanli Mertcan Susus, Ilayda Ucar, Baris E. Suzek. 519 [doi]
- Identifying Symptom Clusters in Women Experiencing Preterm BirthTing He, Casey Overby Taylor. 520 [doi]
- Ranking Methods of Candidates for p53 Inhibitors Considering Cytotoxicity Using Machine LearningHaruka Motohashi, Tatsuro Teraoka, Shin Aoki, Hayato Ohwada. 521 [doi]
- Practical Feature Selection for Lung Cancer Gene DetectionMin-Wei Hsieh, Hayato Ohwada, Sheng-I Chen. 522 [doi]
- Improving LIWC Using Soft Word MatchingYuan Gong, Kevin Shin, Christian Poellabauer. 523 [doi]
- PTM Knowledge Networks and LINCS Multi-Omics Data for Kinase Inhibitor Drug-Analytics in Lung CancerXu Zhang, Karen E. Ross, Tapan K. Maity, Jake Jaffe, Cathy H. Wu, Udayan Guha. 524 [doi]
- Knowledge Extraction of Long-Term Complications from Clinical Narratives of Blood Cancer Patients with HCT TreatmentsWeizhong Zhu, Jennifer Berano Teh, Haiqing Li, Saro H. Armenian. 525-526 [doi]
- Identifying Genes to Predict Cancer Radiotherapy-Related Fatigue with Machine-Learning MethodsWei Du, Kristin Dickinson, Calvin A. Johnson, Leorey N. Saligan. 527 [doi]
- HarMinMax: Harmonizing Codon Usage to Replicate Local Host TranslationGabriel Wright, Anabel Rodriguez, Patricia L. Clark, Scott J. Emrich. 528 [doi]
- Use of the Informatics for Integrating Biology and the Bedside (i2b2) Population to Test Serum Bilirubin Levels and Risk for Inflammatory Bowl Diseases and the Involvement of Uridine Glucuronosyltransferase GenesCarla J. Gallagher. 529 [doi]
- Using a Network Approach to Identify Genes Important during Anther DevelopmentSaleh Tamim, Blake Meyers. 530 [doi]
- Sentence Similarity Measures Revisited: Ranking Sentences in PubMed DocumentsQingyu Chen, Sun Kim, W. John Wilbur, Zhiyong Lu. 531-532 [doi]
- Balancing Confidentiality and Sharing of Genomic and Phenotypic Data in a Clinical Research SystemDaniel Veltri, Zhiwen Li, Sandhya Xirasagar, Andrew J. Oler, Xi Cheng, Ke Huang, Jason Barnett, Lingwen Zhang, Octavio Juarez Espinosa, Yongjie Fan, Morgan Similuk, Magdalena Walkiewicz, Celine Hong, Joyce Johnson, Joshua D. Milner. 533 [doi]
- Early Prediction of Risk Adjustment Factor (RAF) for Medicare Advantage (MA) and Evaluation of its BenefitsHadi Zarkoob, Prasanna Desikan, Prakash Menon, Harshna Kapashi, Hossein Fakhrai-Rad, Barrie Bradley. 534 [doi]
- Comparative Analysis of Tools for Predicting the Functional Impact of mtDNA VariantsMadeline P. Griffin, Catherine E. Welsh. 535 [doi]
- Determination of Immunophenotypic Changes by CyTOF, Epigenetics and Component Resolved Diagnostics During Successful Desensitization in Multi-food Oral ImmunotherapySandra Andorf, Monali Manohar, R. Sharon Chinthrajah, Sheena Gupta, Holden T. Maecker, Stephen J. Galli, Kari C. Nadeau. 536 [doi]
- Faster Computation of Genome MappabilitySahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. Thankachan. 537 [doi]
- A Novel Approach for Increasing Taxonomic Resolution in Protein-Based AlignmentsCooper J. Park, Keir J. Macartney, Junfu Shen, Kunpeng Xie, Xin Zhang, R. Daniel Bergeron, W. Kelley Thomas, Cheryl P. Andam, Anthony Westbrook. 538 [doi]
- Using Similarity Metrics on Real World Data to Recommend the Next TreatmentKyle Haas, Malika Mahoui, Simone Gupta, Stuart Morton. 539 [doi]
- An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny ReconstructionJodh Pannu, Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru. 540 [doi]
- RESTful API for iPTMnet: An Integrated Resource for Protein Post-translational Modification Network DiscoverySachin Gavali, Julie Cowart, Chuming Chen, Karen Ross, Cathy H. Wu. 541 [doi]
- Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision MedicineChuming Chen, Julie E. Cowart, Jia Ren, Sachin Gavali, Yuqi Wang, Hongzhan Huang, Cathy H. Wu, Leslie Arminski, Jian Zhang, Peter B. McGarvey. 542 [doi]
- Systematically Prioritizing Targets in Genome-Based Drug RepurposingAnup P. Challa, Robert R. Lavieri, Judith T. Lewis, Nicole M. Zaleski, Jana K. Shirey-Rice, Paul A. Harris, Jill M. Pulley. 543 [doi]
- Genet-CNV: Boolean Implication Networks for Modelling Genome-Wide Co-occurrence of DNA Copy Number VariationsSalvi Singh, Nancy Lan Guo. 544 [doi]
- Coevolutionary Patterns in HIV-1 Pre-integration Complex Offer Insights into Protein Structural ConstraintsMadara Hetti Arachchilage, Helen Piontkivska. 545 [doi]
- Efficient Distance Calculations Between Genomes Using Mathematical ApproximationYana Hrytsenko, Noah M. Daniels, Rachel S. Schwartz. 546 [doi]
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- Machine Learning Classification of Antimicrobial Peptides Using Reduced AlphabetsManal Othman, Sujay Ratna, Anant Tewari, Anthony M. Kang, Iosif I. Vaisman. 548 [doi]
- Diagnosing Schizophrenia: A Deep Learning ApproachJustin Barry, Srivathsan Srinivasagopalan, Sharma V. Thankachan, Varadraj Gurupur. 549 [doi]
- A Rapid Exact Solution for the Guided Genome Halving ProblemAnton Nekhai, Maria Atamanova, Pavel Avdeyev, Max A. Alekseyev. 550 [doi]
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- Modeling Macromolecular Structures and Motions: Computational Methods for Sampling andAnalysis of Energy LandscapesKevin Molloy, Nasrin Akhter, Amarda Shehu. 554 [doi]
- Agile Clinical Decision Support Development and ImplementationMujeeb A. Basit, Vaishnavi Kannan, DuWayne L. Willett. 555 [doi]
- ACM-BCB'18 Tutorial: Making Deep Learning Understandable for Analyzing Sequential Data about Gene RegulationYanjun Qi. 556 [doi]
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- Interpretable Machine Learning in HealthcareMuhammad Aurangzeb Ahmad, Carly Eckert, Ankur Teredesai. 559-560 [doi]
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