Table of Contents

• Mining Positional Association Super-Rules on Fixed-Size Protein Sequence MotifsBernard Chen, Sinan Kockara. 1-8 [doi]
• A Novel Biological Computation Method for Deriving and Resolving Discernibility RelationsIkno Kim, Junzo Watada, Jui-Yu Wu, Yu-Yi Chu. 9-14 [doi]
• AESNB: Active Example Selection with Naive Bayes Classifier for Learning from Imbalanced Biomedical DataMin Su Lee, Je-Keun Rhee, Byoung-Hee Kim, Byoung-Tak Zhang. 15-21 [doi]
• A Human DNA Methylation Site Predictor Based on SVMYi-Ming Sun, Wei-Li Liao, Hsien-Da Huang, Baw-Jhiune Liu, Cheng-Wei Chang, Jorng-Tzong Horng, Li-Ching Wu. 22-29 [doi]
• Constructing Yeast Phenotypic Gene Network Using Morphological Inclusion RelationsNatsumi Abe, Jun Sese. 30-37 [doi]
• A Generic Framework of Integrating Segmentation and RegistrationJonghyun Park, Wanhyun Cho, Soon-Young Park, Junsik Lim, Soo-Hyung Kim, Gueesang Lee. 38-44 [doi]
• Soft Tissue Deformation and Optimized Data Structures for Mass Spring MethodsTansel Halic, Sinan Kockara, Coskun Bayrak, Richard Rowe, Bernard Chen. 45-52 [doi]
• 3D Reconstruction of Colon Segments from Colonoscopy ImagesDongHo Hong, Wallapak Tavanapong, Johnny Wong, Jung-Hwan Oh, Piet C. de Groen. 53-60 [doi]
• Automatic Tumor Diagnosis for Breast Ultrasound Using 3D Sub-volume RegistrationChii-Jen Chen, Ruey-Feng Chang, Dar-Ren Chen. 61-68 [doi]
• Expectation Maximization driven Geodesic Active Contour with Overlap Resolution (EMaGACOR): Application to Lymphocyte Segmentation on Breast Cancer HistopathologyHussain Fatakdawala, Ajay Basavanhally, Jun Xu, Gyan Bhanot, Shridar Ganesan, Michael D. Feldman, John Tomaszewski, Anant Madabhushi. 69-76 [doi]
• A Novel Approach for Automatic Number of Clusters Detection in Microarray Data Based on Consensus ClusteringXuan Vinh Nguyen, Julien Epps. 84-91 [doi]
• Inferring Causal Relations from Multivariate Time Series: A Fast Method for Large-Scale Gene Expression DataYinyin Yuan, Chang-Tsun Li. 92-99 [doi]
• A Hybrid Feature Selection Method Using Gene Expression DataLi-Yeh Chuang, Kuo-Chuan Wu, Cheng-Hong Yang. 100-106 [doi]
• Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian NetworksMarco Tagliasacchi, Marco Masseroli. 107-114 [doi]
• Online Discovery and Refinement of Novel Genes Using GeneScopeHasan M. Jamil, J. Jesmin. 115-122 [doi]
• A New Method to Combine Heterogeneous Data Sources for Candidate Gene PrioritizationYongjin Li, Jagdish Chandra Patra, Jiabao Sun. 123-129 [doi]
• Interaction Based Functional Clustering of Genomic DataRitesh Krishna, Chang-Tsun Li, Vicky Buchanan-Wollaston. 130-137 [doi]
• Alternative Feature Mapping for Heterogeneous Gene Data ClassificationVictor C. Liang, Vincent T. Y. Ng. 138-145 [doi]
• Empirical Probability Functions Derived from Dihedral Angles for Protein Structure PredictionQiwen Dong, Xin Geng, Shuigeng Zhou, Jihong Guan. 146-152 [doi]
• Spatial Encoding Scheme for Protein Supporting Structure DiscoveryYu-Feng Huang, Chia-Jui Yang, Yi-Wei Yang, Chien-Kang Huang. 153-160 [doi]
• A Data Mining Approach to Predicting Phylum for Microbial Organisms Using Genome-Wide Sequence DataRao M. Kotamarti, Douglas W. Raiford, Michael L. Raymer, Margaret H. Dunham. 161-167 [doi]
• Tri-Cluster-Tri-Scheme-Training: Exploiting Unlabeled Data for Transmembrane Segments PredictionJieyue He, Robert W. Harrison, Phang C. Tai, Yi Pan. 168-175 [doi]
• A Practical Edit-Distance Model for RNA Secondary-Structure ComparisonChan-Shuo Wu, Guan-Shieng Huang. 176-183 [doi]
• Asymptotics of Canonical RNA Secondary StructuresPeter Clote, Evangelos Kranakis, Danny Krizanc. 184-191 [doi]
• Identifying Functional Modules Using MST-Based Weighted Gene Co-Expression NetworksAtthawut Chanthaphan, Santitham Prom-on, Asawin Meechai, Jonathan Hoyin Chan. 192-199 [doi]
• Generating Peptide Sequence Tags for Peptide Identification via Tandem Mass SpectrometryChangyong Yu, Guoren Wang, Yuhai Zhao, Keming Mao, Junjie Wu, Wendan Zhai. 200-207 [doi]
• On the Design of Optimization Algorithms for Prediction of Molecular InteractionsDarby Tien-Hao Chang, Jung-Hsin Lin, Chih-Hung Hsieh, Yen-Jen Oyang. 208-215 [doi]
• Data Matching for Physical Integration of Biochemical Pathway DatabasesJyh-Jong Tsay, Bo-Liang Wu, Chien-Wen Chen. 216-220 [doi]
• Logistic Biclustering Models for Protein Network InferenceCarla Claudia da Rocha Rego Monteiro, Kátia Silva Guimaraes. 221-227 [doi]
• Algorithms Based on Density and Shared Neighbors for Functional Modules Identification in PPI NetworksPeng-Gang Sun, Lin Gao. 228-235 [doi]
• Multi-Agents System to Model Cell Signalling by Using Fuzzy Cognitive Maps. Application to Computer Simulation of Multiple MyelomaVincent Rodin, Gabriel Querrec, Pascal Ballet, François-Regis Bataille, Gireg Desmeulles, Jean François Abgrall, Jacques Tisseau. 236-241 [doi]
• Genetic Algorithm for the Design of Confronting Two-Pair PrimersCheng-Hong Yang, Yu-Huei Cheng, Li-Yeh Chuang, Hsueh-Wei Chang. 242-247 [doi]
• On the Hardness of the Border Length Minimization ProblemVamsi Kundeti, Sanguthevar Rajasekaran. 248-253 [doi]
• Web Services Based Bio-signal System Leveraging Support Vector MachinesSung-huai Hsieh, Sheau-Ling Hsieh, Chia-Ping Shen, Wei-Hsin Chen, Po-Hsun Cheng, Kai-Ping Hsu, Chi-Huang Chen, Feipei Lai. 254-259 [doi]
• RiboSW Tzu-Hao Chang, Li-Ching Wu, Chi-Ta Yeh, Cheng-Wei Chang, Baw-Jhiune Liu, Hsien-Da Huang, Jorng-Tzong Horng. 260-265 [doi]
• A Computational Approach to Detect CNVs Using High-throughput SequencingMyungjin Moon, Jaegyoon Ahn, Youngmi Yoon, Chihyun Park, Sanghyun Park, Jeehee Yoon. 266-271 [doi]
• Applied GM(0, N) Model in the Study of Influence Factor in Preterm NeonatesMei-Li You, Hsiao-Ying Chen, Shu-Peng Liu, Kun-Li Wen. 272-277 [doi]
• Knowledge Discovery on In Vitro Fertilization Clinical Data Using Particle Swarm OptimizationChih-Chuan Chen, Chao-Chin Hsu, Yi-Chung Cheng, Sheng-Tun Li. 278-283 [doi]
• Exploring the Receptor-Based Virtual Screening Study of the Aromatic Substituents for the Hepatitis C Virus NS5B Polymerase by Docking and ScoringPo-Yuan Chen, Wei-Tse Hsu, Mien-De Jhuo, Tzu-Hurng Cheng. 284-289 [doi]
• ArrayQ: Querying Microarray Expressions for Relevant PathwaysShahriyar Hossain, Cherie Southwood, Hasan M. Jamil, Alexander Gow. 290-294 [doi]
• Data Mining Techniques for the Identification of Genes with Expression Levels Related to Breast Cancer PrognosisGabriele Giarratana, Marco Pizzera, Marco Masseroli, Enzo Medico, Pier Luca Lanzi. 295-300 [doi]
• The Energy Distribution Data Bank: Collecting Energy Features of Protein Molecular StructuresDariusz Mrozek, Bozena Malysiak-Mrozek, Stanislaw Kozielski, Andrzej Swierniak. 301-306 [doi]
• Efficiency Enhancement of Protein Folding for Complete Molecular Simulation via Hardware ComputingWen-Tsai Sung. 307-312 [doi]
• Vascular Tree Construction with Anatomical Realism for Retinal ImagesKai-Shung Lin, Chia-Ling Tsai, Michal Sofka, Chih-Hsiangng Tsai, Shih-Jen Chen, Wei-Yang Lin. 313-318 [doi]
• Simulation of Ultrasound Propagation in Cancellous Bone by Solving Elastic Wave Equation Using Finite Difference Time Domain MethodNima Hemmati, Mohammad Djavad Abolhassani. 319-323 [doi]
• Brain Tissue Classification Using Independent Vector Analysis (IVA) for Magnetic Resonance ImageYaw-Jiunn Chiou, Hsian-Min Chen, Jyh Wen Chai, Clayton Chi-Chang Chen, Yen Chieh Ouyang, Wu-Chung Su, Ching-Wen Yang, San-Kan Lee, Chein-I Chang. 324-329 [doi]
• Tracking the Intracellular Dynamics of Transferrin-labeled QDs in Living Panc-1 CellsGaixia Xu, Junle Qu, Stefan Jäger, Qingfeng Song, Su-Shing Chen. 330-334 [doi]
• Image Analysis for High Content Screening with cellAnalystJoerg Meyer, Ash Pahwa, Peter Saveliev. 335-340 [doi]
• Learning Scaling Coefficient in Possibilistic Latent Variable Algorithm from Complex Diagnosis DataZong-Xian Yin. 341-343 [doi]
• Newborn Screening System Based on Adaptive Feature Selection and Support Vector MachinesSung-huai Hsieh, Yin-Hsiu Chien, Chia-Ping Shen, Wei-Hsin Chen, Po-Hao Chen, Sheau-Ling Hsieh, Po-Hsun Cheng, Feipei Lai. 344-347 [doi]
• Nonlinear Dynamic Indications in Time Series of Epilepsy ElectroencephalogramTa-Cheng Chen, Jiunn-I Shieh, Kuei-Jen Lee, Jing-Doo Wang, Pei-Chun Chang, Hsiang-Chuan Liu. 348-351 [doi]
• Quantitative Analysis of Endodontic Treatment for Periapical Lesions in Intraoral RadiographsTaeju Lee, Hyekyung Jeong, Desok Kim, Byung-Do Lee. 352-355 [doi]
• A Multidimensional Flow Cytometry Data ClassificationMing-Chih Shih, Shou-Hsuan Stephen Huang, Chung-Che Jeff Chang. 356-359 [doi]
• Multi-Modal Registration of Embryonic Images for In Vitro FertilizationChia-Ling Tsai, Su-Ching Liang, William Warger, Charles DiMarzio. 360-363 [doi]
• Immunomagnetical Reduction Using High Tc Superconducting Quantum Interference Device (SQUID)Jen-Jie Chieh, Chi-How Chen, Shieh-Yueh Yang, Herng-Er Horng, Chin-Yih Hong, Hong-Chang Yang. 364-365 [doi]
• Segmentation of Brain MR Images Using an Ant Colony Optimization AlgorithmMyung-Eun Lee, Soo-Hyung Kim, Wan Hyun Cho, Soon-Young Park, Junsik Lim. 366-369 [doi]
• The MAPK Signal Pathway Research and New Drug DiscoveryPo-Yuan Chen, Mien-De Jhuo, Wei-Tse Hsu, Tzu-Ching Shih, Tzu-Hurng Cheng. 370-373 [doi]
• Phylogenetic Analysis Using Nuclear-Encoded Mitochondrial ProteinsAlan C. H. Chen, Han C. W. Hsiao, Jeffrey J. P. Tsai. 374-377 [doi]
• A Novel Approach for Motif Identification in Unaligned Molecular SequencesRong-Ming Chen, M. T. Hou, Jeffrey J. P. Tsai. 378-381 [doi]
• Profiling the Nanoparticles Associated Protein-protein InteractionsWei-Chen Liao, Nai-Kuei Huang. 382-385 [doi]
• A Platform for Identifying MicroRNA Targeting GenesChia-Wei Weng, Chang-Chih Chiang, Chien-Hung Huang, Ka-Lok Ng. 386-387 [doi]
• Enzyme Relational Network Reveals Target Enzymes within Metabolic SubmodulesChalothorn Liamwirat, Supapon Cheevadthanarak, Asawin Meechai, Sakarindr Bhumiratana. 388-391 [doi]
• ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein InteractionsKang-Ping Liu, Lu-Shian Chang, Jinn-Moon Yang. 392-399 [doi]
• Analysis of Autism Prevalence and Neurotoxins Using Combinatorial Fusion and Association Rule MiningChristina Schweikert, Yanjun Li, David Dayya, David Yens, Martin Torrents, D. Frank Hsu. 400-404 [doi]
• Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory NetworksTse-Yi Wang, Kuang-Chi Chen, D. Frank Hsu, Cheng-Yan Kao. 405-409 [doi]
• Microarray Gene Expression Analysis Using Combinatorial FusionCameron McMunn-Coffran, Christina Schweikert, D. Frank Hsu. 410-414 [doi]
• Integration of Heterogeneous Medical Decision Support Systems Based on Web ServicesChung-C. Chang, Hsueh-Ming Lu. 415-422 [doi]
• Wedjat: A Mobile Phone Based Medicine In-take Reminder and MonitorMei-Ying Wang, P. H. Tsai, J. W.-S. Liu, John K. Zao. 423-430 [doi]
• Beamformer-Based Spatiotemporal Imaging of Correlated Brain ActivitiesI-Tzu Chen, Yong-Sheng Chen, Li-Fen Chen. 431-434 [doi]
• EEG-Based Spatial Navigation Estimation in a Virtual Reality Driving EnvironmentChin-Teng Lin, Fu-Shu Yang, Te-Chung Chiou, Li-Wei Ko, Jeng-Ren Duann, Klaus Gramann. 435-438 [doi]
• Automated Sleep Staging Using Single EEG Channel for REM Sleep DeprivationYu-Hsun Lee, Yong-Sheng Chen, Li-Fen Chen. 439-442 [doi]
• Faster and Active Surveillance of Hospital-Acquired Infections: A Model for Settings with High Sensitivity PredictorsYao-Wen Chung, Yu-Sheng Lo, Wen-Sen Lee, Min-Huei Hsu, Chien-Tsai Liu. 443-448 [doi]
• SCDL Applications to Drug DiscoveryDavid A. Hecht, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai. 449-454 [doi]
• Describing Dynamic Biological Systems in SPDL and SCDLCharles C. N. Wang, David A. Hecht, Han C. W. Hsiao, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai. 455-460 [doi]
• Normalizing Biomedical Name Entities by Similarity-Based Inference Network and De-ambiguity MiningChih-Hsuan Wei, I-Chin Huang, Yi-Yu Hsu, Hung-Yu Kao. 461-466 [doi]
• An Integrative Tool for Gene Regulatory Network Reconstruction Based on Microarray DataJong-Waye Ou, Rouh-Mei Hu, Rong-Ming Chen, C. Y. Tang, Jeffrey J. P. Tsai. 467-470 [doi]