Table of Contents

• Sequence-Based Prediction of Protein Folding Rates Using Contacts, Secondary Structures and Support Vector MachinesGuan Ning Lin, Zheng Wang, Dong Xu, Jianlin Cheng. 3-8 [doi]
• Bioinformatics Pipeline for Identification of Binding Motifs of Flexible Protein TethersJeffrey L. Ram, Yi Lu. 9-14 [doi]
• Extremal Optimization for the Protein Structure AlignmentHengyun Lu, GenKe Yang, Lam Fat Yeung. 15-19 [doi]
• Biological Feature Incorporated Alignment for Cross Species Analysis on Carbohydrate Binding ModulesWei-Yao Chou, Shu-Chuan Lin, Rong-Yuan Huang, Ting-Ying Jiang, Chien-Jung Chen, Chia-Mao Wu, Chuan Yi Tang, Margaret Dah-Tsyr Chang, Wei-I Chou, Hao-Teng Chang. 20-25 [doi]
• Accurate Prediction of Stability Changes in Bacteriophage T4 Lysozyme upon Single Amino Acid ReplacementsMajid Masso, Tariq Alsheddi, Iosif I. Vaisman. 26-30 [doi]
• High Throughput Short Read Alignment via Bi-directional BWTTak Wah Lam, Ruiqiang Li, Alan Tam, Simon Wong, Edward Wu, Siu-Ming Yiu. 31-36 [doi]
• Neural Grammar Networks in QSAR ChemistryEddie Y. T. Ma, Stefan C. Kremer. 37-42 [doi]
• Predicting Yeast Synthetic Lethal Genetic Interactions Using Protein DomainsBo Li, Feng Luo. 43-47 [doi]
• Detection of Gene Orthology Based on Protein-Protein Interaction NetworksFadi Towfic, M. Heather West Greenlee, Vasant Honavar. 48-53 [doi]
• Assessment of Gene Annotation Accuracy by Inferring Transcripts from RNA-SeqJeffrey Martin, Wenhan Zhu, Nicholas H. Bergman, Mark Borodovsky. 54-59 [doi]
• An Algorithm for the Discovery of Phenotype Related Metabolic PathwaysMatthew C. Schmidt, Nagiza F. Samatova. 60-65 [doi]
• Protein Long Disordered Region Prediction Based on Profile-Level Disorder Propensities and Position-Specific Scoring MatrixesBin Liu, Lei Lin, Xiaolong Wang, Xuan Wang, Yi Shen. 66-69 [doi]
• ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical PropertiesHyrum Carroll, Mark J. Clement, Quinn Snell, David A. McClellan. 70-73 [doi]
• 3D Rotation Invariant Features for the Characterization of Molecular Density MapsMin Xu, Shihua Zhang, Frank Alber. 74-78 [doi]
• Fast Motif Selection for Biological SequencesPavel P. Kuksa, Vladimir Pavlovic. 79-82 [doi]
• Inexact Local Alignment Search over Suffix ArraysMohammadreza Ghodsi, Mihai Pop. 83-87 [doi]
• Derivation of Transcriptional Regulatory Relationships by Partial Least Squares RegressionMehmet Tan, Faruk Polat, Reda Alhajj. 88-91 [doi]
• Statistical Methods for Detecting Latent Periodicity in Biological Sequences: Solving a Problem of Small-Size SamplesMaria Chaley, Nafisa Nazipova, Elena Teplukhina, Gayane Tyulbasheva, Vladimir Kutyrkin. 92-96 [doi]
• Modeling Protein Interaction Networks with Answer Set ProgrammingTimur Fayruzov, Martine De Cock, Chris Cornelis, Dirk Vermeir. 99-104 [doi]
• Restructuring Protein Interaction Networks to Reveal Structural Hubs and Functional OrganizationsYoung-Rae Cho, Aidong Zhang. 105-110 [doi]
• High Functional Coherence in k-Partite Protein Cliques of Protein Interaction NetworksQian Liu, Yi-Ping Phoebe Chen, Jinyan Li. 111-117 [doi]
• Exploratory Analysis of Protein Translation Regulatory Networks Using Hierarchical Random GraphsDaniel Duanqing Wu, Xiaohua Hu, Tingting He. 118-123 [doi]
• Qualitative Motif Detection in Gene Regulatory NetworksZina M. Ibrahim, Ahmed Y. Tawfik, Alioune Ngom. 124-129 [doi]
• Towards Reliable Isoform Quantification Using RNA-Seq DataBrian E. Howard, Steffen Heber. 130-135 [doi]
• Identifying Gene Signatures from Cancer Progression Data Using Ordinal AnalysisYoon Soo Pyon, Jing Li. 136-141 [doi]
• Side Effect Prediction Using Cooperative PathwaysMutsumi Fukuzaki, Mio Seki, Hisashi Kashima, Jun Sese. 142-147 [doi]
• DASSO-MB: Detection of Epistatic Interactions in Genome-Wide Association Studies Using Markov BlanketsBing Han, Meeyoung Park, Xue-wen Chen. 148-153 [doi]
• Disease Classification Based on the Activities of Interacting Molecular Modules with Condition-Responsive CorrelationSejoon Lee, Eunjung Lee, Kwang Hyung Lee, Doheon Lee. 154-159 [doi]
• A Multi-task Feature Selection Filter for Microarray ClassificationLiang Lan, Slobodan Vucetic. 160-165 [doi]
• A 2-Stage Approach for Inferring Gene Regulatory Networks Using Dynamic Bayesian NetworksAkther Shermin, Mehmet A. Orgun. 166-169 [doi]
• Microarray Biclustering with Crowding Based MOACOJunwan Liu, Zhoujun Li, Xiaohua Hu, Yiming Chen. 170-173 [doi]
• Using Gene Pair Combinations to Improve the Accuracy of the PAM ClassifierPankaj Chopra, Jaewoo Kang, Jinseung Lee. 174-177 [doi]
• The Analysis of Arabidopsis thaliana Circadian Network Based on Non-stationary DBNs Approach with Flexible Time Lag Choosing MechanismYi Jia, Jun Huan. 178-181 [doi]
• Biofilm Image Segmentation Using Optimal Multi-level ThresholdingDarío Rojas, Luis Rueda, Alioune Ngom, Homero Urrutia, Gerardo Carcamo. 185-190 [doi]
• Model-Based ECG Denoising Using Empirical Mode DecompositionYan Lu, Jingyu Yan, Yeung Yam. 191-196 [doi]
• Extraction of Respiratory Rate from Impedance Signal Measured on Arm: A Portable Respiratory Rate Measurement DeviceSardar Ansari, Kayvan Najarian, Kevin Ward, Mohamad Hakam Tiba. 197-202 [doi]
• Integrated Analysis of Pharmacokinetic, Clinical, and SNP Microarray Data Using Projection onto the Most Interesting Statistical Evidence with Adaptive Permutation TestingStan Pounds, Xueyuan Cao, Cheng Cheng, Jun Yang, Dario Campana, William E. Evans, Ching-Hon Pui, Mary Relling. 203-209 [doi]
• Building a Standards-Based and Collaborative E-Prescribing ToolStuart J. Nelson, Kelly Zeng, John Kilbourne. 210-215 [doi]
• RIC: Ranking with Interaction Chains and Its Application in Computational Clinical Proteomics StudiesJieun Jeong, Jake Y. Chen. 216-221 [doi]
• Towards Identification of Human Disease Phenotype-Genotype Association via a Network-Module Based MethodJeffrey Q. Jiang, Andreas W. M. Dress, Ming Chen. 222-227 [doi]
• Multiagent Approach for Identifying Cancer BiomarkersAla Qabaja, Mohammed Al-Shalalfa, Reda Alhajj, Jon G. Rokne. 228-233 [doi]
• Feature Extraction for Pulse Waveform in Traditional Chinese Medicine by Hemodynamic AnalysisHaixia Yan, Yiqin Wang, Zhaorong Liu, Rui Guo, Fufeng Li, Fengying Run, Yujian Hong. 234-238 [doi]
• Differential Predictive Modeling for Racial Disparities in Breast CancerIndranil Palit, Chandan K. Reddy, Kendra L. Schwartz. 239-245 [doi]
• Identifying MiRNA and Imaging Features Associated with Metastasis of Lung Cancer to the BrainSara Nasser, Aarati R. Ranade, Shravan Sridhart, Lisa Haney, Ronald L. Korn, Michael B. Gotway, Glen J. Weiss, Seungchan Kim. 246-251 [doi]
• Evolution of the Probability of an MPM (Multiple Primary Malignancy) after a First Colon TumorAlberto Cavallo, Cocetta Dodaro, Andrea Renda. 252-256 [doi]
• An Efficient Noise Cancellation Technique to Remove Noise from the ECG Signal Using Normalized Signed Regressor LMS AlgorithmMohammad Zia Ur Rahman, Rafi Ahamed Shaik, D. V. Rama Koti Reddy. 257-260 [doi]
• Using Forearm Electromyograms to Classify Hand GesturesGene Shuman. 261-264 [doi]
• A Device for Detecting and Counting Bites of Food Taken by a Person during EatingYujie Dong, Adam Hoover, Eric Muth. 265-268 [doi]
• Clinical Attribute Network for Chronic Lymphocytic LeukemiaAbhisek Kundu, Hatice Gulcin Ozer, Tara Borlawsky, Kristin C. Circle, Kun Huang, Philip Payne. 279-282 [doi]
• Hospital Admission Prediction Using Pre-hospital VariablesJiexun Li, Lifan Guo, Neal Handly. 283-286 [doi]
• Hybrid SVM for Multiclass Arrhythmia ClassificationAniruddha J. Joshi, Sharat Chandran, Vaidyanathan K. Jayaraman, Bhaskar D. Kulkarni. 287-290 [doi]
• Traumatic Pelvic Injury Outcome Prediction by Extracting Features from Relevant Medical Records and X-Ray ImagesWenAn Chen, Rebecca Smith, Simina Vasilache, Kayvan Najarian, Kevin Ward, Charles Cockrell, Jonathan Ha. 291-294 [doi]
• A Fast, Semi-automatic Brain Structure Segmentation Algorithm for Magnetic Resonance ImagingKevin Karsch, Qing He, Ye Duan. 297-302 [doi]
• Pancreas Modeling from IVGTT Data Using a Deterministic Optimal Search MethodDayu Lv, Bill Goodwine. 303-308 [doi]
• GemAffinity: A Scoring Function for Predicting Binding Affinity and Virtual ScreeningKai-Cheng Hsu, Yen-Fu Chen, Jinn-Moon Yang. 309-314 [doi]
• A Novel Deterministic-Stochastic Crossover Method for Simulating Biochemical NetworksAmit Sabnis, Robert W. Harrison. 315-320 [doi]
• GAM: Genomic Assemblies Merger: A Graph Based Method to Integrate Different AssembliesAlberto Casagrande, Cristian Del Fabbro, Simone Scalabrin, Alberto Policriti. 321-326 [doi]
• Activated Germinal-Center B Cells Undergo Directed MigrationMark J. O Connor, Anja E. Hauser, Ann M. Haberman, Steven H. Kleinstein. 327-331 [doi]
• Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of MixturesGuoqiang Yu, Bai Zhang, Jianfeng Xu, Ie-Ming Shih, Yue Wang. 332-337 [doi]
• Determination of Major Lineages of Mycobacterium tuberculosis Complex Using Mycobacterial Interspersed Repetitive UnitsMinoo Aminian, Amina Shabbeer, Kristin P. Bennett. 338-343 [doi]
• Towards a Better Ranking for Biomedical Information Retrieval Using ContextXiaoshi Yin, Xiangji Huang, Zhoujun Li. 344-349 [doi]
• Ensemble Learning Based on Active Example Selection for Solving Imbalanced Data Problem in Biomedical DataMin Su Lee, Sangyoon Oh, Byoung-Tak Zhang. 350-355 [doi]
• Application of Kernel Functions for Accurate Similarity Search in Large Chemical DatabasesXiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald H. Lushington. 356-361 [doi]
• A Hybrid Method to Discover and Rank Cross-Disciplinary AssociationsYue W. Webster, Ranga Chandra Gudivada, Ernst R. Dow, Jacob Koehler, Mathew Palakal. 362-365 [doi]
• Biomedical Relationship Extraction from Literature Based on Bio-semantic Token SubsequencesJayasimha Reddy Katukuri, Ying Xie, Vijay V. Raghavan. 366-370 [doi]
• A Protein-Protein Interaction Prediction Method Embracing Intra-protein Domain Cohesion InformationWoo-Hyuk Jang, Suk Hoon Jung, Bo-ra Hyun, Dong-Soo Han. 371-374 [doi]
• BioCLink: A Probabilistic Approach for Improving Genomics Search with Citation LinksXiaoshi Yin, Xiangji Huang, Zhoujun Li. 375-378 [doi]
• DNAjig: A New Approach for Building DNA NanostructuresMd. Muksitul Haque, Ananth Kalyanaraman, Amit Dhingra, Nehal Abu-Lail, Kaori Graybeal. 379-383 [doi]
• Enhancing Pathway Based Analysis Using Different Weighting SchemesSook S. Ha, Inyoung Kim, Jianhua Xuan. 384-387 [doi]
• Analyzing DNA Copy Number Changes Using Fused Margin RegressionYuanjian Feng, Guoqiang Yu, Tian-Li Wang, Ie-Ming Shih, Yue Wang. 388-391 [doi]
• Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics ResearchTerry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç. 392-395 [doi]
• Applying Feature Coupling Generalization for Protein-Protein Interaction ExtractionYanpeng Li, Hongfei Lin, Zhihao Yang. 396-400 [doi]
• Real-Time Non-rigid Registration of Medical Images on a Cooperative Parallel ArchitectureYixun Liu, Andriy Fedorov, Ron Kikinis, Nikos Chrisochoides. 401-404 [doi]
• A Generalized Multivariate Approach for Correlation-Based Pattern Discovery from Replicated Molecular Profiling DataDongxiao Zhu, Guorong Xu, Lipi R. Acharya. 405-410 [doi]
• A Genetic Association Study between Breast Cancer and Osteoporosis Using Transitive Text MiningBi-Hua Cheng, Harsha Gopal Goud Vaka, Snehasis Mukhopadhyay. 411-414 [doi]
• Bacterial Foraging Optimization Algorithm Integrating Tabu Search for Motif DiscoveryLinlin Shao, Yuehui Chen. 415-418 [doi]
• Discovering Temporal Associations among Significant Changes in Gene ExpressionHashmat Rohian, Aijun An, Jiashu Zhao, Xiangji Huang. 419-423 [doi]
• Bayesian Classifier for Anchored Protein Sorting DiscoveryFan Zhang, Jianjun Hu. 424-428 [doi]