Table of Contents

• Indexing k-mers in Linear-space for Quality Value CompressionYoshihiro Shibuya, Matteo Comin. 21-29 [doi]
• Detection of Gene-gene Interactions: Methodological Comparison on Real-World Data and Insights on Synergy between MethodsHugo Boisaubert, Christine Sinoquet. 30-42 [doi]
• Method Choice in Gene Set Analysis Has Important Consequences for Analysis OutcomeFarhad Maleki, Katie Ovens, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik. 43-54 [doi]
• The Impact of the Transversion/Transition Ratio on the Optimal Genetic Code Graph PartitionDaniyah A. Aloqalaa, Dariusz R. Kowalski, Pawel Blazej, Malgorzata Wnetrzak, Dorota Mackiewicz, Pawel Mackiewicz. 55-65 [doi]
• On-line Searching in IUPAC Nucleotide SequencesPetr Procházka, Jan Holub 0001. 66-77 [doi]
• Graph-based Characterisations of Cell Types and Functionally Related Modules in Promoter Capture Hi-C DataLelde Lace, Gatis Melkus, Peteris Rucevskis, Edgars Celms, Karlis Cerans, Paulis Kikusts, Martins Opmanis, Darta Rituma, Juris Viksna. 78-89 [doi]
• Identifying and Resolving Genome Misassembly Issues Important for Biomarker Discovery in the Protozoan Parasite, CryptosporidiumArthur Morris, Justin Pachebat, Guy Robinson, Rachel Chalmers, Martin Swain. 90-100 [doi]
• Pattern Matching in Discrete Models for Ecosystem EcologyCinzia Di Giusto, Cédric Gaucherel, Hanna Klaudel, Franck Pommereau. 101-111 [doi]
• Application of Artificial Intelligence in Microwave Radiometry (MWR)Christoforos Galazis, Sergey Vesnin, Igor Goryanin. 112-122 [doi]
• Construct Semantic Type of "Gene-mutation-disease" Relation by Computer-aided Curation from Biomedical LiteratureDongsheng Zhao, Fan Tong, Zheheng Luo. 123-130 [doi]
• Constraint Maximal Inter-molecular Helix Lengths within RNA-RNA Interaction Prediction Improves Bacterial sRNA Target PredictionRick Gelhausen, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Martin Raden. 131-140 [doi]
• Big Data Scalability of BayesPhylogenies on Harvard's Ozone 12k CoresM. Manjunathaiah, A. Meade, R. Thavarajan, P. Protopapas, R. Dave. 143-148 [doi]
• Vectorized Character Counting for Faster Pattern MatchingRoman Snytsar. 149-154 [doi]
• Prediction of Malaria Vaccination Outcomes from Gene Expression DataAhmad Shayaan, Indu Ilanchezian, Shrisha Rao. 155-162 [doi]
• Artificial Neural Network Approach to Prediction of Protein-RNA Residue-base ContactsMorihiro Hayashida, Jose C. Nacher, Hitoshi Koyano. 163-167 [doi]
• In Silico Validation of ncRNA-ncRNA Interaction Sites with ncRNAs Represented by k-mers FeaturesMalik Yousef, Walid Khaleifa, Tugba Onal Suzek. 168-173 [doi]
• Latest Advances in Solving the All-Pairs Suffix Prefix ProblemMaan Haj Rachid. 174-181 [doi]
• Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation AnalysisFarhad Maleki, Anthony J. Kusalik. 182-193 [doi]
• A General Framework for Exact Partially Local AlignmentsFalco Kirchner, Nancy Retzlaff, Peter F. Stadler. 194-200 [doi]
• Data-driven Autism Biomarkers Selection by using Signal Processing and Machine Learning TechniquesAntonio Antovski, Stefani Kostadinovska, Monika Simjanoska, Tome Eftimov, Nevena Ackovska, Ana Madevska-Bogdanova. 201-208 [doi]
• Effect of Database Size in the Genetic Variants CallingSunHee Kim, Young-Suk Lee, Chang-Yong Lee. 209-215 [doi]
• Ontology-powered Semantic Similarity of Biological and Biomedical Entities - The Story So Far, and The Road AheadPrashanti Manda. 216-225
• Mean and Variability in RNA Polymerase Numbers Are Correlated to the Mean but Not the Variability in Size and Composition of Escherichia Coli CellsBilena Almeida, Vatsala Chauhan, Vinodh Kandavalli, Andre S. Ribeiro. 226-233 [doi]
• The Composition of Dense Neural Networks and Formal Grammars for Secondary Structure AnalysisSemyon Grigorev, Polina Lunina. 234-241 [doi]
• Monte Carlo Methods for Assessment of the Mean Glandular Dose in Mammography: Simulations in Homogeneous PhantomsRaffaele M. Tucciariello, Patrizio Barca, Davide Caramella, Rocco Lamastra, Antonio C. Traino, Maria Evelina Fantacci. 242-249 [doi]
• Towards an Efficient Verification Method for Monotonicity Properties of Chemical Reaction NetworksRoberta Gori, Paolo Milazzo, Lucia Nasti. 250-257 [doi]
• Residual Convolutional Neural Networks for Breast Density ClassificationFrancesca Lizzi, Stefano Atzori, Giacomo Aringhieri, Paolo Bosco, Carolina Marini, Alessandra Retico, Antonio C. Traino, Davide Caramella, Maria Evelina Fantacci. 258-263 [doi]
• Clustering and Classification of Breathing Activities by Depth Image from KinectMera Kartika Delimayanti, Bedy Purnama, Ngoc Giang Nguyen, Kunti Robiatul Mahmudah, Mamoru Kubo, Makiko Kakikawa, Yoichi Yamada, Kenji Satou. 264-269 [doi]
• Applying Deep Learning Models to Action Recognition of Swimming Mice with the Scarcity of Training DataNgoc Giang Nguyen, Mera Kartika Delimayanti, Bedy Purnama, Kunti Robiatul Mahmudah, Mamoru Kubo, Makiko Kakikawa, Yoichi Yamada, Kenji Satou. 270-275 [doi]
• Prediction of Subnuclear Location for Nuclear ProteinKenji Satou, Yoshiki Shimaguchi, Kunti Robiatul Mahmudah, Ngoc Giang Nguyen, Mera Kartika Delimayanti, Bedy Purnama, Mamoru Kubo, Makiko Kakikawa, Yoichi Yamada. 276-280 [doi]
• Human Ovulation Hidden Hints and It's Effects on Fluctuant Assymetry StudiesMahsa Kiazadeh, Gabriela Goncalves, Hamid Reza Shahbazkia. 281-288 [doi]
• On the Problem about Optical Flow Prediction for Silhouette ImageBedy Purnama, Mera Kartika Delimayanti, Ngoc Giang Nguyen, Kunti Robiatul Mahmudah, Mamoru Kubo, Makiko Kakikawa, Yoichi Yamada, Kenji Satou. 289-293 [doi]
• Towards Multi-UAV and Human Interaction Driving System Exploiting Human Mental State EstimationGaganpreet Singh, Raphaëlle N. Roy, Caroline P. Carvalho Chanel. 294-301 [doi]
• Loop Grammars to Identify RNA Structural PatternsMichela Quadrini, Emanuela Merelli, Riccardo Piergallini. 302-309 [doi]
• A Proposal for a Language Combining Biochemical Rules and Topological Structure for Systems BiologyA. Joëlle Compaoré, Pascale Le Gall. 310-317 [doi]
• The Importance of Considering Natural Isotopes in Improving Protein Identification AccuracySara El Jadid, Raja Touahni, Ahmed Moussa. 318-321 [doi]
• Study of Dipeptidil Peptidase 4 Inhibitors based on Molecular Docking ExperimentsArata Andrade Saraiva, J. N. Soares, Nator Junior C. Costa, José Vigno M. Sousa, Nuno M. Fonseca Ferreira, António Valente, Salviano Soares. 322-330 [doi]