Jose C. Nacher - researchr alias

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Viewing Publication 1 - 22 from 22

2020

Measuring the Similarity of Proteomes using Grammar-based Compression via Domain CombinationsMorihiro Hayashida, Hitoshi Koyano, Jose C. Nacher. biostec 2020: 117-122 [doi]

2019

Artificial Neural Network Approach to Prediction of Protein-RNA Residue-base ContactsMorihiro Hayashida, Jose C. Nacher, Hitoshi Koyano. biostec 2019: 163-167 [doi]

Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profilesTeppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher. jbcb, 17(3):1940007, 2019. [doi]

2018

2017

Analytical solution for the size of the minimum dominating set in complex networksJose C. Nacher, Tomoshiro Ochiai. ijmssc, 8(1):1750005, 2017. [doi]

2016

Predicting link directionality in gene regulation from gene expression profiles using volatility-constrained correlationTomoshiro Ochiai, Jose C. Nacher. biosystems, 145:9-18, 2016. [doi]

2014

Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating setsJose C. Nacher, Tatsuya Akutsu. compnet, 2(4):394-412, 2014. [doi]

2013

Community structure of non-coding RNA interaction networkJose C. Nacher. jib, 10(2), 2013. [doi]

Analysis on critical nodes in controlling complex networks using dominating setsJose C. Nacher, Tatsuya Akutsu. sitis 2013: 649-654 [doi]

2012

Nonlinear response of gene expression to chemical perturbations: A noise-detector model and its predictionsJose C. Nacher, Vladimir B. Ryabov. biosystems, 107(1):9-17, 2012. [doi]

Protein complex prediction via improved verification methods using constrained domain-domain matchingYang Zhao, Morihiro Hayashida, Jose C. Nacher, Hiroshi Nagamochi, Tatsuya Akutsu. ijbra, 8(3/4):210-227, 2012. [doi]

2010

Structural characterization and modeling of ncRNA-protein interactionsJose C. Nacher, N. Araki. biosystems, 101(1):10-19, 2010. [doi]

The role of internal duplication in the evolution of multi-domain proteinsJose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu. biosystems, 101(2):127-135, 2010. [doi]

2009

Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairsJose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu. biosystems, 95(2):155-159, 2009. [doi]

A Bipartite Graph Based Model of Protein Domain NetworksJose C. Nacher, T. Ochiai, Morihiro Hayashida, Tatsuya Akutsu. bertinoro 2009: 525-535 [doi]

2008

Transcription and noise in negative feedback loopsJose C. Nacher, T. Ochiai. biosystems, 91(1):76-82, 2008. [doi]

2007

Topological aspects of protein networksJose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu. In Akira Namatame, Satoshi Kurihara, Hideyuki Nakashima, editors, Emergent Intelligence of Networked Agents. Volume 56 of Studies in Computational Intelligence, pages 147-158, Springer, 2007. [doi]

Correlation between structure and temperature in prokaryotic metabolic networksKazuhiro Takemoto, Jose C. Nacher, Tatsuya Akutsu. bmcbi, 8, 2007. [doi]

2006

Identification of metabolic units induced by environmental signalsJose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu. ismb 2006: 375-383 [doi]

2004

Clustering under the line graph transformation: application to reaction networkJose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu. bmcbi, 5:207, 2004. [doi]

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