Table of Contents

• Efficient Computation of Base-pairing Probabilities in Multi-strand RNA FoldingRonny Lorenz, Christoph Flamm, Ivo L. Hofacker, Peter F. Stadler. 23-31 [doi]
• Prediction of Dynamical Properties of Biochemical Pathways with Graph Neural NetworksPasquale Bove, Alessio Micheli, Paolo Milazzo, Marco Podda. 32-43 [doi]
• Properties of the Standard Genetic Code and Its Alternatives Measured by Codon Usage from Corresponding GenomesMalgorzata Wnetrzak, Pawel Blazej, Pawel Mackiewicz. 44-51 [doi]
• BROGUE: A Platform for Constructing and Visualizing "Gene-Mutation-Disease" Relation Knowledge Graphs to Support Biomedical Research and Clinical DecisionsDongsheng Zhao, Fan Tong, Zheheng Luo, Sheng Liu, Wei Song. 52-59 [doi]
• Gene Co-expression Analysis for Lung Cancer Biomarkers DetectionStefani Kostadinovska, Slobodan Kalajdziski, Monika Simjanoska. 60-67 [doi]
• Minimal Complexity Requirements for Proteins and Other Combinatorial Recognition SystemsGeorge D. Montañez, Laina Sanders, Howard Deshong. 71-78 [doi]
• Expanding Polygenic Risk Scores to Include Automatic Genotype Encodings and Gene-gene InteractionsTrang T. Le, Hoyt Gong, Patryk Orzechowski, Elisabetta Manduchi, Jason H. Moore. 79-84 [doi]
• Influence of Data Similarity on the Scoring Power of Machine-learning Scoring Functions for DockingKam-Heung Sze, Zhiqiang Xiong, Jinlong Ma, Gang Lu, Wai-Yee Chan, Hongjian Li. 85-92 [doi]
• SIRA-HIV: A User-friendly System to Evaluate HIV-1 Drug Resistance from Next-generation Sequencing DataLetícia Martins Raposo, Mônica Barcellos Arruda, Rodrigo de Moraes Brindeiro, Flavio Fonseca Nobre. 93-100 [doi]
• A Novel Method for the Inverse QSAR/QSPR based on Artificial Neural Networks and Mixed Integer Linear Programming with Guaranteed AdmissibilityNaveed Ahmed Azam, Rachaya Chiewvanichakorn, Fan Zhang, Aleksandar Shurbevski, Hiroshi Nagamochi, Tatsuya Akutsu. 101-108 [doi]
• A Grid-based Simulation Model for the Evolution of Influenza A VirusesHsin-Ting Chung, Yuh-Jyh Hu. 109-116 [doi]
• Measuring the Similarity of Proteomes using Grammar-based Compression via Domain CombinationsMorihiro Hayashida, Hitoshi Koyano, Jose C. Nacher. 117-122 [doi]
• Evaluation of Phenotyping Errors on Polygenic Risk Score PredictionsRuowang Li, Jiayi Tong, Rui Duan, Yong Chen, Jason H. Moore. 123-130 [doi]
• A Machine Learning Approach to Select the Type of Intermittent Fasting in Order to Improve Health by Effects on Type 2 DiabetesShula Shazman. 131-137 [doi]
• Classification of Respiratory Sounds with Convolutional Neural NetworkArata Andrade Saraiva, D. B. S. Santos, A. A. Francisco, José Vigno Moura Sousa, Nuno M. Fonseca Ferreira, Salviano Soares, António Valente. 138-144 [doi]
• EasyModel 1.1: User-friendly Stochastic and Deterministic Simulations for Systems Biology ModelsJordi Bartolome, Rui Alves, Francesc Solsona. 145-149 [doi]
• A Machine Learning-based Approach for the Categorization of MicroRNAs to Their Species of OriginLuise Odenthal, Jens Allmer, Malik Yousef. 150-157 [doi]
• RuleDSD: A Rule-based Modelling and Simulation Tool for DNA Strand Displacement SystemsVinay Gautam, Shiting Long, Pekka Orponen. 158-167 [doi]
• Classification of Optical Coherence Tomography using Convolutional Neural NetworksArata Andrade Saraiva, D. B. S. Santos, Pedro Pimentel, José Vigno Moura Sousa, Nuno M. Fonseca Ferreira, João do E. S. Batista Neto, Salviano Soares, António Valente. 168-175 [doi]
• Validity of the Michaelis-Menten Approximation for the Stability Analysis in Regulatory Reaction NetworksTakashi Naka. 176-182 [doi]
• Development of HIV-1 Coreceptor Tropism Classifiers: An Approach to Improve X4 and R5X4 Viruses PredictionJosé Fernando dos Anjos Rodrigues, Letícia Martins Raposo, Flavio Fonseca Nobre. 183-187 [doi]
• Variable Selection based on a Two-stage Projection Pursuit AlgorithmShu Jiang, Yijun Xie. 188-193 [doi]
• Multi-state Models for the Analysis of Survival Studies in Biomedical Research: An Alternative to Composite EndpointsAlicia Quirós, Armando Pérez de Prado, Natalia Montoya, José M. de la Torre Hernandez. 194-199 [doi]
• Chikungunya Virus Inhibitor Study based on Molecular Docking ExperimentsArata Andrade Saraiva, Soares Jeferson, Castro Miranda, José Vigno Moura Sousa, Nuno M. Fonseca Ferreira, João do E. S. Batista Neto, Salviano Soares, António Valente. 200-205 [doi]
• Advancements in Red Blood Cell Detection using Convolutional Neural NetworksFrantisek Kajánek, Ivan Cimrák. 206-211 [doi]
• Detection of Lattice-points inside Triangular Mesh for Variable-viscosity Model of Red Blood CellsTibor Postek, Frantisek Kajánek, Mariana Ondrusová. 212-217 [doi]
• Metagenomic Clustering in Search of Common OriginJolanta Kawulok, Michal Kawulok. 218-225 [doi]
• Sharing Bioinformatic Data for Machine Learning: Maximizing Interoperability through License SelectionAlexander Bernier, Adrian Thorogood. 226-232 [doi]
• 3D Spatial Dependencies Study in the Hawk and Dove ModelAndrzej Swierniak, Marek Bonk, Damian Borys. 233-238 [doi]
• Theoretical Study of the Fidelity of TranscriptionYao-Gen Shu, Ming Li, Zhong-Can Ou-Yang. 239-241 [doi]
• A Deep-learning based Method for the Classification of the Cellular ImagesCaleb Vununu, Suk Hwan Lee, Ki-Ryong Kwon. 242-245 [doi]
• PIACAN: Pathway Integration and Analysis of Cancer NetworksAdrian Quintana, Vinh Nguyen, Tommy Dang, Chiquito Crasto. 246-252 [doi]
• Using ASAR for Analysis of Electrogenic and Human Gut Microbial CommunitiesIgor Goryanin, Anatoly A. Sorokin, Olga Vasieva. 253-259 [doi]
• Predictive Technologies and Biomedical Semantics: A Study of Endocytic TraffickingRadmila Juric, Elisabetta Ronchieri, Gordana Blagojevic Zagorac, Hana Mahmutefendic, Pero Lucin. 260-267 [doi]
• Adding Value to Translational Informatics through the Semantic Management of Drug to Drug InteractionRadmila Juric. 268-275 [doi]
• Automatic ICD-10 Classification of Diseases from Dutch Discharge LettersAyoub Bagheri, Arjan Sammani, Peter G. M. van der Heijden, Folkert W. Asselbergs, Daniel L. Oberski. 281-289 [doi]
• Multi-class Semantic Segmentation of Skin Lesions via Fully Convolutional NetworksManu Goyal, Moi Hoon Yap, Saeed Hassanpour. 290-295 [doi]
• Two-stage Neural-network based Prognosis Models using Pathological Image and Transcriptomic Data: An Application in Hepatocellular Carcinoma Patient Survival PredictionZhucheng Zhan, Noshad Hossenei, Olivier Poirion, Maria Westerhoff, Eun Young Choi, Travers Ching, Lana X. Garmire. 296-301
• Preliminary Evaluation of the Utility of Deep Generative Histopathology Image Translation at a Mid-sized NCI Cancer CenterJoshua J. Levy, Christopher R. Jackson, Aravindhan Sriharan, Brock C. Christensen, Louis J. Vaickus. 302-311 [doi]
• Semantic Overlapping in Translational Bioinformatics Applied to the Matching between Clinical Trial Eligibility Criteria and Patient NeedsRadmila Juric, Eton Williams, Inhwa Kim. 315-322 [doi]