Table of Contents

• A Virtual Research Environment for Cancer Imaging ResearchM. S. Avila-Garcia, X. Xiong, Anne E. Trefethen, Charles Crichton, Andrew Tsui, P. Hu. 1-6 [doi]
• An Open-source Collaboration Environment for Metagenomics ResearchXiaoquan Su, Yongzheng Ma, Hongwei Yang, Xingzhi Chang, Kai Nan, Jian Xu, Kang Ning. 7-14 [doi]
• rCAD: A Novel Database Schema for the Comparative Analysis of RNAStuart Ozer, Kishore J. Doshi, Weijia Xu, Robin Ray Gutell. 15-22 [doi]
• A National Grid Submission Gateway for eScienceShunde Zhang, Paul D. Coddington, Andrew L. Wendelborn. 23-30 [doi]
• Investigating the Use of Gadgets, Widgets, and OpenSocial to Build Science GatewaysZhenhua Guo, Raminderjeet Singh, Marlon E. Pierce, Yan Liu. 31-38 [doi]
• A Chemistry-Inspired Workflow Management System for Scientific Applications in CloudsHector Fernandez, Cédric Tedeschi, Thierry Priol. 39-46 [doi]
• A Cloud-based Dynamic Workflow for Mass Spectrometry Data AnalysisAshish Nagavaram, Gagan Agrawal, Michael A. Freitas, Kelly H. Telu, Gaurang Mehta, Rajiv Mayani, Ewa Deelman. 47-54 [doi]
• Creating a Cloud-based Life Science GatewayWenjun Wu 0001, Hui Zhang, ZhenAn Li, Yaokuan Mao. 55-61 [doi]
• Optimizing Phylogenetic Analysis Using SciHmm Cloud-based Scientific WorkflowKary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso. 62-69 [doi]
• Wireless Sensing Networks for Environmental Monitoring: Two Case Studies from Tropical ForestsG. Arturo Sanchez-Azofeifa, Cassidy Rankine, Mario Marcos do Espirito Santo, Rob Fatland, Milton Garcia. 70-76 [doi]
• On the Powerful Use of Simulations in the Quake-Catcher Network to Efficiently Position Low-cost Earthquake SensorsK. Benson, Trilce Estrada, Michela Taufer, J. Lawrence, E. Cochran. 77-84 [doi]
• Communicating Coastal Risk Analysis in an Age of Climate ChangeBrian Blanton, John McGee, Oleg Kapeljushnik. 85-88 [doi]
• Application of Data Mining in Research of Avian Influenza Virus Cross-Species InfectionShasha Li, Yuanchun Zhou, Jianhui Li, Ze Luo, Zheng Kou, Tianxian Li, Baoping Yan. 89-96 [doi]
• Fostering Scientific Workflow Preservation through Discovery of Substitute ServicesKhalid Belhajjame, Carole A. Goble, Stian Soiland-Reyes, David De Roure. 97-104 [doi]
• A Novel Framework for Monitoring and Analyzing Quality of Data in Simulation WorkflowsMichael Reiter, Uwe Breitenbücher, Schahram Dustdar, Dimka Karastoyanova, Frank Leymann, Hong Linh Truong. 105-112 [doi]
• Transient Modeling of Permafrost Dynamics in Changing Climate ScenariosAndrew Frampton, Georgia Destouni, Ylva Sjoberg, Scott Painter. 113-118 [doi]
• Evolving Inversion Methods in Geophysics with Cloud Computing - A Case Study of an eScience CollaborationJ. Craig Mudge, Pinaki Chandrasekhar, Graham S. Heinson, Stephan Thiel. 119-125 [doi]
• Assessing the Value of Cloudbursting: A Case Study of Satellite Image Processing on Windows AzureMarty Humphrey, Zach Hill, Catharine van Ingen, Keith R. Jackson, Youngryel Ryu. 126-133 [doi]
• A Provenance Approach to Trace Scientific Experiments on a Grid InfrastructureAmmar Benabdelkader, Mark Santcroos, Souley Madougou, Antoine H. C. van Kampen, Sílvia D. Olabarriaga. 134-141 [doi]
• The SinBiota 2.0 Biodiversity Information SystemCleber V. G. Mira, Pedro Feijão, Tiago Duque-Estrada, Joao Meidanis, Carlos A. Joly. 142-149 [doi]
• Large Scale Participatory Acoustic Sensor Data Analysis: Tools and Reputation Models to Enhance EffectivenessAnthony Truskinger, HaoFan Yang, Jason Wimmer, Jinglan Zhang, Ian Williamson, Paul Roe. 150-157 [doi]
• Preparing DARIAHTobias Blanke, Michael Bryant 0001, Mark Hedges, Andreas Aschenbrenner, Michael Priddy. 158-165 [doi]
• e-Science and the Archaeological FrontierAaron Gidding, Yuma Matsui, Thomas E. Levy, Thomas A. DeFanti, Falko Kuester. 166-172 [doi]
• Building a Semantic Knowledge-base for Painting ConservatorsJane Hunter, Suleiman Odat. 173-180 [doi]
• Building and Operating a Distributed Regional Centre for LHC Computing and Data StorageOxana Smirnova, Gerd Behrmann, Michael Grønager, Daniel Johansson, Josva Kleist, Aleksandr Konstantinov, Balázs Kónya, Henrik Thostrup Jensen. 181-188 [doi]
• iGrid: Interactive GridMarco Meoni. 189-196 [doi]
• Chinese e-VLBI Network: A Multi-purpose e-science PlatformWeimin Zheng, Zhong Chen, Guangli Wang, Fengchun Shu, Weihua Wang, Xiao Chen, Tao An. 197-201 [doi]
• Adaptive Inference of Fine-grained Data Provenance to Achieve High Accuracy at Lower Storage CostsMohammad Rezwanul Huq, Andreas Wombacher, Peter M. G. Apers. 202-209 [doi]
• A Scalable Architecture for e-Science Data ManagementSalman Zubair Toor, Manivasakan Sabesan, Sverker Holmgren, Tore Risch. 210-217 [doi]
• The Adaptive Collection and Analysis of Distributed Multimedia Sensor DataMark Cottman-Fields, Anthony Truskinger, Jason Wimmer, Paul Roe. 218-223 [doi]
• Collaborative eResearch in a Social CloudAshfag M. Thaufeeg, Kris Bubendorfer, Kyle Chard. 224-231 [doi]
• Dynamic Handling for Cooperating Scientific Web ServicesReginald Cushing, Spiros Koulouzis, Adam Belloum, Marian Bubak. 232-239 [doi]
• In Situ Data Provenance Capture in SpreadsheetsHazeline U. Asuncion. 240-247 [doi]
• HELIO: Discovery and Analysis of Data in HeliophysicsRobert Bentley, John M. Brooke, André Csillaghy, Donal Fellows, Anja Le Blanc, Mauro Messerotti, David Perez-Suarez, Gabriele Pierantoni, Marco Soldati. 248-255 [doi]
• Scaling Dalton, A Molecular Electronic Structure ProgramXavier Aguilar, Michael Schliephake, Olav Vahtras, Judit Gimenez, Erwin Laure. 256-262 [doi]
• Dynamic Pipeline Changes in Scientific Data ProcessingJohnson Mwebaze, Danny Boxhoorn, Edwin Valentijn. 263-270 [doi]
• Enforcing Scientific Data Sharing AgreementsMichael D. Wilson, Shirley Y. Crompton, Brian Matthews, Alexey Orlov. 271-278 [doi]
• A Mosaic of SoftwareKenton McHenry, Rob Kooper, Michal Ondrejcek, Luigi Marini, Peter Bajcsy. 279-286 [doi]
• Creating Infrastructure for Tool-Independent Querying and Exploration of Scientific WorkflowsValentina Ivanova, Lena Strömbäck. 287-294 [doi]
• Towards an e-Infrastructure for Urban Research across AustraliaRichard O. Sinnott, Gerson Galang, Martin Tomko, Robert Stimson. 295-302 [doi]
• A Linked Data Approach to Publishing Complex Scientific WorkflowsArif Shaon, Sarah Callaghan, Bryan Lawrence, Brian Matthews, Andrew Woolf, Timothy Osborn, Colin Harpham. 303-310 [doi]
• Experiences Using GlideinWMS and the Corral Frontend across CyberinfrastructuresMats Rynge, Gideon Juve, Gaurang Mehta, Ewa Deelman, Krista Larson, Burt Holzman, Igor Sfiligoi, Frank Würthwein, G. Bruce Berriman, Scott Callaghan. 311-318 [doi]
• Large-scale Simulations of Turbulence: HPC and Numerical ExperimentsPhilipp Schlatter, Johan Malm, Geert Brethouwer, Arne V. Johansson, Dan S. Henningson. 319-324 [doi]
• The Saaz Framework for Turbulent Flow QueriesAlden King, Eric Arobone, Scott B. Baden, Sutanu Sarkar. 325-331 [doi]
• Parallel Finite Element Operator Application: Graph Partitioning and ColoringKatharina Kormann, Martin Kronbichler. 332-339 [doi]
• Cyberinfrastructure Intership and its Application to e-ScienceDavid Abramson, Peter W. Arzberger, Gabriele Wienhausen, Jim Galvin, Susumu Date, Fang-Pang Lin, Kai Nan, Shinji Shimojo. 340-347 [doi]
• Cyberinfrastructure and e-Science Application Practices in Chinese Academy of SciencesXiangyang Huang, Ze Luo, Baoping Yan. 348-354 [doi]
• e-Science Practice for Wild Birds' Monitoring and Protection in Qinghai Lake RegionZe Luo, Baoping Yan, Yuanchun Zhou, Jian Li, MingJie Tang, Haiming Zhang, Jing Shao, Shasha Li, Fumin Lei, Peng Cui, Tianxian Li, Zheng Kou, YuanSheng Hou, Yubang He, Zhi Xing. 355-362 [doi]
• A Social Cloud for Public eResearchJohn Koshy, Kris Bubendorfer, Kyle Chard. 363-370 [doi]
• A User-orientated Electronic Laboratory Notebook for Retrieval and Extraction of Provenance Information for EUROCHAMP-2Zulkifly Mohd Zaki, Peter M. Dew, Mohammed H. Haji, Lydia M. S. Lau, Andrew Rickard, Jennifer Young. 371-378 [doi]
• A Framework for Efficient Data Analytics through Automatic Configuration and Customization of Scientific WorkflowsMatheus Hauder, Yolanda Gil, Yan Liu. 379-386 [doi]
• Design of a Parallel Hybrid Direct/Iterative Solver for CFD ProblemsJonas Thies, Fred W. Wubs. 387-394 [doi]
• CarbBuilder: An Adjustable Tool for Building 3D Molecular Structures of Carbohydrates for Molecular SimulationMichelle Kuttel, Yue Mao, Goran Widmalm, Magnus Lundborg. 395-402 [doi]
• An Approach to Optimise the Execution of RTM Algorithm in Multicore MachinesAlexandre da Costa Sena, Aline de P. Nascimento, Cristina Boeres, Vinod E. F. Rebello, André Bulcão. 403-410 [doi]