Abstract is missing.
- Arabidopsis defense response against Pseudomonas syringae - Effects of major regulatory genes and the impact of coronatineLin Wang, Fumiaki Katagiri, Jane Glazebrook. 1-4 [doi]
- A CoD based reduction algorithm for Boolean and probabilistic Boolean networksNoushin Ghaffari, Ivan Ivanov, Edward R. Dougherty. 1-2 [doi]
- A neural network model for early diagnosis of acute GVHD based on gene expression dataMaurizio Fiasché, Maria Cuzzola, Matteo Cacciola, Giuseppe Megali, Roberta Fedele, Pasquale Iacopino, Francesco Carlo Morabito. 1-4 [doi]
- Critical Boolean networks require minimal intervention rateGolnaz Vahedi, Ilya Shmulevich, Wenbin Liu, Edward R. Dougherty. 1-2 [doi]
- Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1Sivaraman Balakrishnan, Oznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman. 1-4 [doi]
- Characterization of systems-level organization through mining large-scale genetic interaction networksJeremy Bellay, Benjamin VanderSluis, Yungil Kim, Sunayan Bandyopadhyay, Chad L. Myers. 1-4 [doi]
- Mining "junk" DNA to find hidden transcriptional gemsGustavo Glusman. 1-4 [doi]
- Entropy-based analysis of ChIP-Sequencing dataHossein Zare, Mostafa Kaveh, Arkady B. Khodursky. 1-4 [doi]
- Towards the reconstruction of Brassica napus seed development FA metabolism dynamic regulatory mapAlain B. Tchagang, Hugo Bérubé, Ziying Liu, Sieu Phan, Fazel Famili, Youlian Pan. 1-4 [doi]
- Message-passing for motif findingSang Hyun Lee, Haris Vikalo, Sriram Vishwanath. 1-4 [doi]
- Enhancing gene detection with computer generated intergenic regionsJuan Caballero, Gustavo Glusman. 1-4 [doi]
- The partition of temporal gene expression sequence using discrete wavelet transform for modellingLe Yu, Stephen Marshall. 1-4 [doi]
- On the mutual information between interaction perplexity and function of proteinsStephanie Tscherneck, Sarah Strunk, Christian Schmidt, Paul Hammer, Ronny Amberg, Chong Wang, Rainer Gillert, Antje Krause, Gabriele Petznick, Peter Beyerlein. 1-4 [doi]
- Tuning technique for the location of hot spots in proteins using a bandpass notch digital filterParameswaran Ramachandran, Wu-Sheng Lu, Andreas Antoniou. 1-4 [doi]
- Quantification of data extraction noise in probabilistic Boolean Network modelingRanadip Pal, Aniruddha Datta, Edward R. Dougherty. 1-4 [doi]
- A particle filtering algorithm for parameter estimation in real-time biosensor arraysMahsuni Gokdemir, Haris Vikalo. 1-4 [doi]
- How effective is the data on co-occurrence of domains in multi-domain proteins in prediction of protein-protein interactions?Smita Mohanty, Narayanaswamy Srinivasan. 1-4 [doi]
- Reconstructing latent periods in genome sequences with insertions and deletionsRaman Arora, Colin N. Dewey, William A. Sethares. 1-4 [doi]
- Identification of altered regulatory pathways in diabetes type II and complications through expression networksUrmi Sengupta, Sanchaita Ukil, Nevenka Dimitrova, Shipra Agrawal. 1-4 [doi]
- Stochastic modeling of second order reactions using a moment propagation methodVibha Mane, Mónica F. Bugallo, Petar M. Djuric. 1-4 [doi]
- Analysis of temporal gene expression profiles using time-dependent MUSIC algorithmNidhal Bouaynaya, Dan Schonfeld, Radhakrishnan Nagarajan. 1-4 [doi]
- A sensitivity analysis of microarray feature selection and classification under measurement noiseHerman M. J. Sontrop, René van den Ham, Perry D. Moerland, Marcel J. T. Reinders, Wim F. J. Verhaegh. 1-4 [doi]
- Identifying patterns of copy number variants in case-control studies of human genetic disordersAbdullah K. Alqallaf, Ahmed H. Tewfik, Paula Krakowiak, Flora Tassone, Ryan Davis, Robin Hansen, Irva Hertz-Picciotto, Isaac Pessah, Jeff Gregg, Scott B. Selleck. 1-4 [doi]
- Sample size calculation from specified RMS of the resubstitution error for linear classifiersAmin Zollanvari, Ulisses Braga-Neto, Edward R. Dougherty. 1-2 [doi]
- Computational analysis of functionally related genes in mouse response to Plasmodium chabaudiViviane Tchonang Leuche, Ahmed H. Tewfik. 1-4 [doi]
- Partial profile alignment kernels for protein classificationThanh T. Ngo, Rui Kuang. 1-4 [doi]
- Revealing temporal genetic regulatory networks from steady-state distributionsDavid Correa Martins Jr., Evaldo A. de Oliveira, Paulo J. S. Silva, Ronaldo Fumio Hashimoto, Roberto Marcondes Cesar Jr.. 1-4 [doi]
- Target estimation in real-time polymerase chain reaction using sequential Monte CarloArun Miduthuri, Ting Wu, Haris Vikalo. 1-4 [doi]
- In-silico conditioning of microRNA to identify potential biomarkers from serum for pancreatic cancerSara Nasser, Glen J. Weiss, Aarati R. Ranade, Seungchan Kim. 1-4 [doi]
- Association analysis techniques for analyzing complex biological data setsGaurav Pandey, Gowtham Atluri, Gang Fang, Rohit Gupta, Michael Steinbach, Vipin Kumar. 1-4 [doi]
- Inference of gene regulatory network using temporal coefficient of determination obtained from ergodic Markov chainsCarlos H. A. Higa, Ronaldo Fumio Hashimoto, Roberto Hirata Jr., Nina S. T. Hirata, Carlos S. Santos. 1-4 [doi]
- Treelets as feature transformation tool for block diagonal linear discriminationLingyan Sheng, Antonio Ortega, Roger Pique-Regi, Shahab Asgharzadeh. 1-4 [doi]
- Control-compatible state reduction for Boolean networksXiaoning Qian, Edward R. Dougherty. 1-2 [doi]
- Stochastic modeling and signal processing of nano-scale protein-based biosensorsSahar M. Monfared, Vikram Krishnamurthy, Bruce Cornell. 1-6 [doi]
- Consistency in representation and transformation of genomic sequencesLiming Wang, Dan Schonfeld. 1-4 [doi]
- Modified K-leap method for stochastic simulation of genetic networks with small number of moleculesZhouyi Xu, Xiaodong Cai. 1-4 [doi]
- Maximum likelihood factor analysis in malaria cytokines analysis and modellingAlbert Oliveras-Vergés. 1-4 [doi]
- A hypergraph-based learning algorithm for classifying arraycgh data with spatial priorZe Tian, TaeHyun Hwang, Rui Kuang. 1-4 [doi]
- A new approach for identification of hot spots in proteins using S-Transform filteringSitanshu Sekhar Sahu, Ganapati Panda. 1-4 [doi]
- Budding yeast cell cycle modeled by context-sensitive probabilistic Boolean networkRonaldo Fumio Hashimoto, Henrique Stagni, Carlos H. A. Higa. 1-4 [doi]
- Bolstered error estimator with feature selectionChao Sima, Thang T. Vu, Ulisses Braga-Neto, Edward R. Dougherty. 1-2 [doi]
- Machine learning approach for classifying histone modificationsAparna Gorthi, Ravi Jain, Nevenka Dimitrova. 1-4 [doi]
- A comprehensive study of a SVM-based miRNA target prediction algorithmHui Liu, Dong Yue, Yidong Chen, Yufei Huang. 1-4 [doi]
- Open-Loop Feedback Intervention: Control of gene regulatory networks with unmeasurable contextBabak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty. 1-2 [doi]
- Stochastic modeling of reaction kinetics in biosensors using the Fokker Planck equationShreepriya Das, Haris Vikalo, Arjang Hassibi. 1-4 [doi]
- Inference of transition probabilities between the attractors in Boolean networks with perturbationLe Yu, Steven Watterson, Stephen Marshall, Peter Ghazal. 1-4 [doi]
- Towards identification of thematic overlaps in gene setsNilanjana Banerjee, Vinay Varadan, Sitharthan Kamalakaran, Angel Janevski. 1-4 [doi]
- Comparative study of GRNS inference methods based on feature selection by mutual informationFabrício Martins Lopes, David Correa Martins Jr., Roberto Marcondes Cesar Jr.. 1-4 [doi]
- Subspace pursuit for gene profile classificaitonXiyi Hang, Wei Dai, Fang-Xiang Wu. 1-4 [doi]
- The effects of pre-processing and parameter choices on searches through large gene expression data collectionsMatthew A. Hibbs. 1-4 [doi]
- Bagging degrades the performance of linear discriminant classifiersThang T. Vu, Ulisses Braga-Neto, Edward R. Dougherty. 1-2 [doi]
- Genetic variation detection using maximum likelihood estimatorAbdullah K. Alqallaf, Ahmed H. Tewfik, Scott B. Selleck. 1-4 [doi]
- Expectation-maximization-estimation of mixture densities for Electron-Spin-Resonance-analysis of albuminChristian Schmidt, Carsten Krumbiegel, Katja Waterstradt, Gabriele Petznick, Holger Schäfer, Kerstin Schnurr. 1-4 [doi]
- Analyzing steady state probability distributions of Context-sensitive Probabilistic Boolean NetworksRanadip Pal. 1-4 [doi]
- Joint stochastic sampling for RNA secondary structure predictionArif Ozgun Harmanci, Gaurav Sharma, David H. Mathews. 1-4 [doi]