Table of Contents

• The Gaps in the Terminological Representation of the ACORN Social Determinants of Health SurveyC. Maria Keet. 1-10 [doi]
• Environmental Health Language Collaborative (EHLC): a Route to Environmental Health Science Data HarmonizationAnna Maria Masci, Stephanie Holmgren, Charles Schmitt, Rima Habre, Anne E. Thessen, Rebecca Boyles, Carmen J. Marsit. 1-6 [doi]
• Shaping the Semantics of Healthy and Sustainable Food Systems: a Participatory Metaframework-based ApproachGiorgio A. Ubbiali, Andrea Borghini, Nicola Piras, Matthew C. Lange. 1-2 [doi]
• Development of Axiomatization for the Cholangiocarcinoma Ontology Using Common Logic Interchange FormatAnuwat Pengput, Alexander D. Diehl. 1 [doi]
• Toward an Occupation Ontology, OccOSam Smith, Damion M. Dooley, Eric Merrell, John Beverley, Yongqun He. 1 [doi]
• An Ontological Approach to Developing a Unified and Interdisciplinary Framework for AgingFumiaki Toyoshima, Adrien Barton, Jean-François Ethier. 1-11 [doi]
• Ontological Analysis of Collection Improves Classification of Cardinality PhenotypesSarah M. Alghamdi, Robert Hoehndorf. 1-2 [doi]
• Summarising scRNAseq Expression Data in FlyBaseDamien Goutte-Gattat. 1-4 [doi]
• Investigating Ontology Use in Artificial Intelligence and Machine Learning for Biomedical Research - A Preliminary Report from A Literature ReviewAsiyah Yu Lin, Andrey Ibrahim Seleznev, Tianming "Danny" Ning, Paulene Grier, Lalisa "Mariam" Lin, Christopher Travieso, Ansu Chatterjee, Jaleal Sanjak. 1-4 [doi]
• The Ontology of Adverse Events in 2022Qiuyue Yang, Jun Su, Xue Zhang, Yongqun He, Jiangan Xie. 1 [doi]
• Performance Summary Display Ontology: Feedback Intervention Content, Delivery, and Interpreted InformationZach Landis-Lewis, Cooper Stansbury, John Rincon, Colin Gross. 1-10 [doi]
• OMOP-2-OPMI: Ontologization of OMOP CDM Using OPMI to Support Clinical Data interoperability and analysisLong Tran, Yongqun He. 1-11 [doi]
• Building an Application Ontology and Knowledge Graph for Rare Disease Patient-Level DataEmily Hartley, Daniel Olson, Ian Braun, Nicolas Matentzoglu, James A. Overton, Ramona L. Walls. 1 [doi]
• The OntoDev Suite of Ontology and Data Integration ToolsJames A. Overton. 1 [doi]
• Knowledge of the Ancestors: Intelligent Ontology-aware Annotation of Biological Literature using Semantic SimilarityPratik Devkota, Somya D. Mohanty, Prashanti Manda. 1-10 [doi]
• A Data Structure for the Implementation of Referent Tracking SystemsLauren Wishnie, Alexander D. Diehl. 1 [doi]
• COB: A Core Ontology for Biology and BiomedicineJames A. Overton, Rebecca C. Jackson, Nicolas Matentzoglu, William D. Duncan, Randi Vita, Nomi L. Harris, Christopher J. Mungall, Bjoern Peters. 1 [doi]
• Ontology Integration for Discovering Bioresources Contributing to Medical Science ResearchTatsuya Kushida, Daiki Usuda, Toyoyuki Takada, Yuki Yamagata, Hiroshi Masuya. 1 [doi]
• The Gaps in the Terminological Representation of the ACORN Social Determinants of Health SurveyMelissa P. Resnick, Diane Montella, Wilmon McCray, Steven H. Brown, Keith E. Campbell, Jonathan R. Nebeker, Frank LeHouillier, Peter L. Elkin. 1-10 [doi]
• Ubergraph: Integrating OBO Ontologies into a Unified Semantic GraphJames P. Balhoff, Ugur Bayindir, Anita R. Caron, Nicolas Matentzoglu, David Osumi-Sutherland, Christopher J. Mungall. 1-9 [doi]
• Coordinating Coronavirus Research: The Virus Infectious Disease OntologyJohn Beverley, Yongqun He, Barry Smith 0001, Shane Babcock, Eric Merrell, Lindsay G. Cowell, Regina Hurley, Sebastian Deusing. 1-14 [doi]
• Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO)Sabrina Toro, Nicolas Matentzoglu, Kathleen R. Mullen, Nicole A. Vasilevsky, Halie Rando, Melissa A. Haendel, Christopher J. Mungall, Zhi-Liang Hu, Gregoire Leroy, Imke Tammen, Frank W. Nicholas. 1-7 [doi]
• An Ontological Representation of Money with a View Toward Economic Determinants of HealthMatthew Diller, William R. Hogan. 1-9 [doi]
• An Ontology for Healthcare SystemsFrançois Goyer, Paul Fabry, Adrien Barton, Jean-François Ethier. 1-9 [doi]
• NIDM-Experiment: An Ontology for Annotating Neuroscientific DataKarl G. Helmer, Derek Chaplin, Nazek Queder, Satrajit S. Ghosh, Camille Maumet, Jean-Baptiste Poline, Theo G. M. van Erp, David B. Keator. 1-3 [doi]
• Building a Radiation Therapy OntologyMark Phillips, Andre Dekker, Charles Mayo, Peter Gabriel, Jonathan P. Bona. 1 [doi]
• Collaborative Development of a Process Chemistry Domain Ontology, PROCOWes Schafer, Jan Nespor, Vincent Antonucci, Yongqun Oliver He, Anna Dunn, Zachary E. X. Dance. 1 [doi]
• Translating Medical Vocabularies via the Unified Medical Language SystemsWilliam T. Roddy, Daniel Olson, Diane Corey, Ian Braun, Terrence R. McHugh, Emily Hartley, Smith Heavner, Ramona L. Walls. 1-2 [doi]
• From Survey to Ontology, the Challenges and Opportunities in Ontologizing Questions and AnswersLauren E. Chan, Jimmy Phuong, Anne E. Thessen, Stephanie S. Hong, Shahim Essaid, Melissa A. Haendel. 1 [doi]
• The Coevolution of Ontologies and Knowledge-based Analytics in BioinformaticsRobert Hoehndorf. 1-4 [doi]
• Using Ontologies to Enhance Data on Intimate Partner ViolenceS. Clint Dowland, William R. Hogan. 1-6 [doi]
• Development of an Image Data Set Class: Its Role in Biomedical Imaging and Neuroimaging ResearchAlexander Bartnik, Lucas M. Serra, Mackenzie T. Smith, William D. Duncan, Alan Ruttenberg, Michael G. Dwyer, Alexander D. Diehl. 1-9 [doi]
• OBO Academy: Training Materials for BioontologistsJames A. Overton, Rebecca C. Jackson, Sabrina Toro, Shawn Zheng Kai Tan, Bradley Varner, David Osumi-Sutherland, Nicolas Matentzoglu, Nicole A. Vasilevsky. 1 [doi]
• AlphaFold, AI and OntologiesBarry Smith 0001. 1-3 [doi]
• Ontological Representation and Analysis of the Molecular Interactions Related to COVID-19-associated Acute Kidney InjuryGhida Arnous, Yongqun He. 1 [doi]
• Knowledge Systematization for Cellular Senescence Processes by Homeostasis Imbalance Process OntologyYuki Yamagata, Shuichi Onami, Hiroshi Masuya. 1 [doi]
• Ontology Representation for CholangiocarcinomaAnuwat Pengput, Alexander D. Diehl. 1-7 [doi]
• Data Harmonization through Use of Community Standards in the Common Fund Data EcosystemMichelle G. Giglio, Suvarna Nadendla, Arthur Brady, Amanda Charbonneau, Karl Czajkowski, Jeremy Yang, Tom Gillespie, Philippe Rocca-Serra, Jeffrey S. Grethe, Raja Mazumder, Bernard de Bono, Jonathan C. Silverstein, Daniel Clark, Mark A. Musen, Owen White. 1-7 [doi]
• Enhancing Childhood Nutrition Data with Open Biomedical OntologiesJonathan P. Bona, Alexander D. Diehl, Alexander P. Cox, Aaron S. Kemp, Linda Larson-Prior. 1 [doi]
• The Protein Conformation OntologyMorgan Mitchell, Lauren M. Wishnie, Alexander D. Diehl. 1 [doi]