Table of Contents

• gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell dataSimone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni. 1 [doi]
• MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract)Dinghua Li, Henry Chi-Ming Leung, Chi-Kwong Wong, Yifan Zhang, Wai-Chun Law, Yan Xin, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam. 1 [doi]
• PCA-like Methods for the Integration of Single Cell RNA-seq Data with Metabolic NetworksKrzysztof Gogolewski, Anna Gambin. 1 [doi]
• Tumor Copy Number Data Deconvolution Integrating Bulk and Single-cell Sequencing DataHaoyun Lei, Bochuan Lyu, E. Michael Gertz, Alejandro A. Schäffer, Russell Schwartz. 1 [doi]
• An integrative approach to transcriptional co-regulatory network construction and characterization in ArabidopsisMaryam Zand, Zhen Gao, Jinmao Wei, Garry Sunter, Jianhua Ruan. 1-6 [doi]
• EMS3: An Improved Algorithm for Finding Edit-distance Based MotifsPeng Xiao, Xingyu Cai, Sanguthevar Rajasekaran. 1 [doi]
• Ensemble Deep TimeNet: An Ensemble Learning Approach with Deep Neural Networks for Time SeriesSudipta Pathak, Xingyu Cai, Sanguthevar Rajasekaran. 1 [doi]
• Codon-Based Sequence Alignment for Mutation Analysis by High-Throughput SequencingSing-Hoi Sze, Craig D. Kaplan. 1 [doi]
• So you think you can PLS-DA?Daniel Ruiz-Perez, Haibin Guan, Purnima Madhivanan, Kalai Mathee, Giri Narasimhan. 1 [doi]
• The Human Microbiome: a New Frontier That Might Just Affect EverythingGeorge Weinstock. 1 [doi]
• Computational Study of Hodgkin-Huxley Type Calcium-Dependent Potassium Current in Urinary Bladder Over ActivityChitaranjan Mahapatra, Keith L. Brain, Rohit Manchanda. 1-4 [doi]
• Statistical Mitogenome Assembly with RepeatsFahad Alqahtani, Ion I. Mandoiu. 1 [doi]
• endo-siRBase: A multi-species developmental endo-siRNA repository and searchable databaseKelly Daescu. 1-5 [doi]
• Deep Learning and Networks for Integrative Analysis of Multi-Omic DataAidong Zhang. 1 [doi]
• Identification of Ribosome Pause Sites Using a Z-Score Based Peak Detection AlgorithmPatrick Perkins, Steffen Heber. 1-6 [doi]
• Improved Decoy Selection via Machine Learning and RankingNasrin Akhter, Gopinath Chennupati, Hristo Djidjev, Amarda Shehu. 1 [doi]
• Linear Space String Correction Algorithm Using The Damerau-Levenshtein DistanceChunchun Zhao, Sartaj Sahni. 1 [doi]
• Metagenomic read clustering based on overlap graphsMarleen Balvert, Alexander Schönhuth, Bas E. Dutilh. 1 [doi]
• SC1: A web-based single cell RNA-seq analysis pipelineMarmar Moussa, Ion I. Mandoiu. 1 [doi]
• Parameter Estimation of Stochastic Biochemical Models using Multiple Hypothesis TestingArfeen Khalid, Sumit Kumar Jha 0001. 1 [doi]
• Topological implications of negative curvature for biological networksBhaskar DasGupta. 1 [doi]
• Identification of intrinsic disorder in complexes from Protein Data BankJianhong Zhou, Christopher J. Oldfield, Fei Huang, Wenying Yan, Bairong Shen, A. Keith Dunker. 1 [doi]
• Convolutional Neural Network for Automated Mass Segmentation in MammographyDina Abdelhafiz, Sheida Nabavi, Reda Ammar, Clifford Yang, Jinbo Bi. 1 [doi]
• Identifying the Signatures of Missing TranscriptsBhupinder Sehra, Effat Farhana, Steffen Heber. 1 [doi]
• Faster Computation of Genome Mappability with one MismatchSahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. Thankachan. 1 [doi]
• Identification of Disease States for Trauma Patients using Commonly Available Hospital DataMahnaz Koupaee, Yuanyang Zhang, Tie Bo Wu, Mitchell J. Cohen, Linda Petzold. 1-4 [doi]
• Computational cell cycle analysis of single cell RNA-seq dataMarmar Moussa. 1 [doi]
• Image Based Detection of Craniofacial Abnormalities using Feature Extraction by Classical Convolutional Neural NetworkSaloni Agarwal, Rami R. Hallac, Rashika Mishra, Chao Li, Ovidiu Daescu, Alex A. Kane. 1-6 [doi]
• Inferring Relationships in Microbiomes from Signed Bayesian NetworksMusfiqur Rahman Sazal, Daniel Ruiz-Perez, Trevor Cickovski, Giri Narasimhan. 1 [doi]