Table of Contents

• Multiple Testing for Gene Expression Data: An Investigation of Null Distributions with Consequences for the Permutation TestKatherine S. Pollard, Mark J. van der Laan. 3-9
• GeneBox: Interactive Visualization of Microarray Data SetsNameeta Shah, Vladimir Filkov, Bernd Hamann, Kenneth I. Joy. 10-16
• Identification of Replication Sites via a Nonparametric Method in BacteriaJ. Z. Song, T. Ware, S. Liu, M. Surrette. 17-21
• Prediction of Protein-Protein Interaction Sites Using Support Vector MachinesYohei Minakuchi, Kenji Satou, Akihiko Konagaya. 22-28
• Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thalianaIrfan Gunduz, Sihui Zhao, Mehmet M. Dalkilic, Sun Kim. 29-34
• Internet-Available Software Packages for Analysis of DNA Sequence ComplexityYuri L. Orlov, Vladimir D. Gusev, Lubov A. Nemytikova, V. N. Potapov, Nadia A. Kolchanov. 35-38
• Approximate Versus Exact Characterizations of Data Mining: An Example from GeneticsKarl-Ernst Biebler, Michael Wodny, Bernd Jäger. 39-41
• Improved Promoter Prediction by Two-Phase Neural NetworkNeng-Wen Lo, S. Wesley Changchien, Yi-Feng Chang. 42-46
• Why Classification Models Using Array Gene Expression Data Perform So Well: A Preliminary Investigation of Explanatory FactorsConstantin F. Aliferis, Ioannis Tsamardinos, P. Massion, Alexander R. Statnikov, Douglas Hardin. 47-53
• A New Self-Organizing Map and Fuzzy Logic Based Data Mining Approach for Genetic and Phenotypic Analysis of Rat StrainsXin Feng, Hao Jiang, Xiao Dong, Peter J. Tonellato. 54-59
• Scoring-Based Analysis of Protein Patterns for Identification of Myeloma CancerGrzegorz M. Boratyn, Tomasz G. Smolinski, Mariofanna G. Milanova, Jacek M. Zurada, Sudeepa Bhattacharyya, Larry J. Suva. 60-65
• Multipoint Fine-Scale Mapping Susceptibility Genes with Multiple Ancestral HaplotypesJianping Dong, Shuanglin Zhang, Renfang Jiang. 66-71
• A Novel Computational Model for Predicting Interactive Sites of ProteinsChia-Chyi Li, Wing Ning Li. 72-76
• PISMOL: A Software Tool for Protein Interactive Site Prediction Model DevelopmentChia-Chyi Li, Wing Ning Li. 77-81
• Efficient Fault Tolerant Apriori Algorithm for Discovering Association Rules among Local Protein StructuresGye Hyung Kim, Minho Kim, Jun-Ho Her, R. S. Ramakrishna. 82-87
• Feature Selection of Support Vector Regression for Quantitative Structure-Activity Relationships (QSAR)Lei Huang, Hsiao-Mei Lu, Yang Dai. 88-93
• Information Extraction from Semi-Structured Data in the Protein Data Bank by Induction of a Data Description PatternYouhei Kawaguchi, Yoshikazu Kaneta, Takenao Ohkawa, Haruki Nakamura. 94-99
• Automatic Extraction of Protein Active Site Information from Literature Using Template Matching and Anaphora AnalysisYoshikazu Kaneta, M. Numa, Takenao Ohkawa. 100-106
• Entropy of Probability Distributions and Its Applications in ATM Networks and DNA SequencesN. Gintis, M. X. He, P. E. Ricci. 107-111
• Data Mining and BioinformaticsJunping Sun. 112-118
• Comparison of Three Nonparametric Density Estimation Techniques Using Bayes Classifiers Applied to Microarray Data AnalysisChristopher A. Peters, Faramarz Valafar. 119-125
• An Efficient Method for Multiple Sequence Alignment Using Subalignment RefinementJin Kim, Saangyong Uhmn. 126-134
• 2D Constant Time Correlated Spectroscopy (CT-COSY): Simulated and Experimental ResultsS. Banakar, H. Chung, M. A. Thomas. 135-139
• A Study of Conformational Changes in Macromolecules: The Coarse-Grained Elastic Network Interpolation MethodMoon K. Kim, Robert L. Jernigan, Bruce A. Shapiro, Gregory S. Chirikjian. 140-145
• Statistical Validation of Compound Structure-Selectivity Relationship Using NCI Cancer DatabaseJing Li 0002, Chris Benner, Tao Jiang, Yingyao Zhou. 146-151
• XtalGrow: Probabilistic Screen Design for Protein CrystallographyDaniel N. Hennessy, Bruce G. Buchanan, John M. Rosenberg. 152-158
• Development of Support Tool for NMR Spectrum AnalysisShouji Tatsumoto, Kenji Satou, Akihiko Konagaya, Jun ichi Kurita, Hideto Shimahara, Shin-ichi Tate. 159-164
• Haplotype Inference for Multiple Tightly Linked Marker Phenotypes Including Nuclear Family InformationHuann-Sheng Chen, Shuanglin Zhang. 165-171
• Grouping of Partially Methylated Alditol Acetates from GC-EIMS Spectra Using Principal Component Analysis, Non-Parametric Density Estimation and K-Nearest Neighbor ClassificationI. Arora, Faramarz Valafar. 172
• An Ontology-Based Cancer Pain Management SystemKrishnendu Ghosh. 181-185
• Management of Streaming Body Sensor Data for Medical Information SystemsAlfonso F. Cardenas, Raymond K. Pon, Robert B. Cameron. 186-191
• Management of Diseases with the Use of Fuzzy LogicHossein S. Anasri. 192-195
• A Distributed Disaster Management SystemNenad Marovac, Paul Staehly. 196-197
• Advances in the RSI Multiprocessor System for Intraoperative Bioelectrical Signal RegisteringMaurício Campelo Tavares, F. A. O. Costa, Fernando Mendes de Azevedo. 198-204
• CDSSGen: A Dynamic Clinical Decision Support System GeneratorHeejung Chang, Hyungki Song, Kangsun Lee, Gyochang Kim, Jonghoon Chun, Jinwook Choi. 205-209
• Development of a HIPAA Compliant Wireless Medical Data Application: Wireless Blood Glucose MonitorStewart Russell, Akira Kawaguchi, Guoliang Qian. 210-215
• Locally Variant VOR in Fully 3D SPECT within a Service Oriented EnvironmentWerner Backfrieder, Martin Forster, Siegfried Benkner, Gerhard Engelbrecht. 216-221
• Design and Implementation of HL7 Based Real-Time Clinical Data Integration SystemSooyoung Yoo, Boyoung Kim, Heekyong Park, Jinwook Choi, Jonghoon Chun. 222-230
• DIO: Drug Interaction Ontology - Application to Inferences in Possible Drug-Drug InteractionsSumi Yoshikawa, Akihiko Konagaya. 231-236
• An Expert System for Exercise Prescription Using XML-Based TemplatesHiye-Ja Lee, Seung-Hun Park, Byeong-Soo Jeong. 237-246
• Theoretical and Practical Problems of EEG Based Analysis of Human - System InteractionMirko Novak, Josef Faber, Zdenek Votruba. 247-255
• Analysis of EEG Signals During Mental TasksMin-Soo Kim, Hee Don Seo. 256-262
• An Automated Technique for the Interpretation of BiosignalsSyed Haque, Dinesh P. Mital, Shankar Srinivasan, Ritu Agarwal. 263-268
• Prediction of the Coronary Heart Disease Using Neural Network Based ModelDinesh P. Mital, Syed Haque, Shankar Srinivasan, Smita Namboodiri. 269-275
• National Tuberculosis Center Web Application (NTBCWeb)Meeta Vete, Shankar Srinivasan, Dinesh P. Mital, Syed Haque. 276-281
• Design of a Docking-Based Virtual High Throughput Screening SystemS. S. Qadry, Nancy H. McDonald. 282-287
• Joinpoint Analysis of Trends in SEER Lung and Bronchus Cancer IncidenceRosemary Ferdinand, Syed Haque. 288-293
• Structural Analysis of the Finger Subdomain in DNA PolymerasesDeborah Josko, Kamalendra Singh, Mukund J. Modak. 294-299
• Discovering Inconsistencies in UWDA - A UMLS Source VocabularyHuanying Gu, Yulong Li, Syed Haque. 300-306
• New Numerical Solution of the Laplace Equation for Three-Dimensional MRIHaissam Haidar, Svetlana Egorova, Janet S. Soul. 307-311
• A New Optical Design and Image Assessment of Ultrahigh Resolution Magnifying Endoscope for Sub-Cellular ImagingBong soo Lee, Dong H. Cho. 312-314
• Rough Sets, Independent Components Analysis in Feature Extraction and Selection of MammogramsRoman W. Swiniarski. 315-320
• DIGO: An Automatic Fluorescent Image Analyzer for Quantitative Analysis of Antinuclear AntibodiesPaulo Luiz Carvalho Francescantônio, Leandro Luis Galdino de Oliveira, Eduardo Simões de Albuquerque. 321-328
• Development of an Algorithm to Compute Polarizable Interactions Using Multigrid and Multipole MethodsThuy-Linh Dinh, Gary A. Huber. 329-335
• A Fourth-Order Compact Finite Difference Scheme for Solving a 1-D Pennes Bioheat Transfer Equation in a Uniform TissueWeizhong Dai, Haofeng Yu, Raja Nassar, Teng Zhu. 336-339
• Computer Simulations of Mathematical Models Arising in BioremediationSophia R.-J. Jang, Ben W.-L. Jang. 340-346
• Development of a Computer Tool for Anthropometric AnalysesK. L. Robbins, Q. Wu. 347-353
• A Mathematical Model of Transport in the Renal MedullaM. E. Rosar. 354-359
• Principal Component Analysis, A Powerful Unsupervised Learning TechniqueGeorge C. J. Fernandez. 360-365
• Monte Carlo Simulations of Curved Lipid MembranesArlette Baljon, Arun Ponnuswamy. 366-370
• Causal Explorer: A Causal Probabilistic Network Learning Toolkit for Biomedical DiscoveryConstantin F. Aliferis, Ioannis Tsamardinos, Alexander R. Statnikov, Laura E. Brown. 371-376
• Contact Time Dependence of Adhesive EnergyArlette Baljon, Travis Depuy, Joris Vorselaars. 377-383
• Fibonacci Sequence Generation Using Membrane ComputingJon Inouye. 384-389
• Direct Voxelization of Geometric Objects Based on Cutting Surfaces Of a CubeYeamseok Choee, Oubong Gwun, Juwhan Song, Seungwan Kim. 390-398
• Automatic Left Ventricular Boundary Detection from Echocardiographic Images Using Multiscale AnalysisJierong Cheng, Say Wei Foo, Shankar M. Krishnan. 399-405
• Discovering Critical Diagnostic Features for Heart Diseases with a Hybrid Genetic AlgorithmHongmei Yan, Yingtao Jiang, Jun Zheng, Chenglin Peng, Shouzhong Xiao. 406-409
• Model of Vessels for the 3D ReconstructionLuis Álvarez León, K. Baños Rodríguez, C. Cuenca Hernández, J. Esclarín Monreal, J. Sánchez Pérez. 410-416
• Modeling of Catheter-Based Ablation of the Left Atrial-Pulmonary Vein Junction in Human HeartsSreela Sasi, Igino Contrafatto, Elisa M. Konieczko, James D. Maloney. 417-426
• A Power Law Model of HIV-1 Population Dynamics under Combination Antiretroviral TherapyJack K. Horner. 427-432
• On Another ODE for HIV/AIDS PropagationBhagwan D. Aggarwala. 433-439
• Numerical Simulation of HIV DynamicsClaudia de Lello Courtouké Guedes, Joyce da Silva Bevilacqua. 440-446
• Genetic Code as a Gray Code RevisitedDragan Bosnacki, Huub M. M. ten Eikelder, Peter A. J. Hilbers. 447-456
• J-Food: A Java Framework for Optimization Of DietJames G. Mullen. 457-460
• Relationship between Trabecular Pattern and PMMA Volume for Vertebroplasty Using Fractal AnalysisGye Rae Tack, Ja Jung Koo, Sung Jae Lee, Kyu Chul Shin, Jae Bong Choi. 461-466
• A Stochastic Method for Solving Inverse Problems in Epidemic ModellingDominik Novotni, Andreas Weber 0004. 467-473
• A Bayesian-Network Sensitivity Analysis of the Partin-Table Prostate Cancer Diagnostic Protocol to Single-Bin Promotion of Gleason ScoreJack K. Horner. 474-478
• Computer Interaction for Highly Vision-Impaired People by Means of Color-Coded InformationHerwig Mayr. 479-485
• Construction of the Bulk of General Population in the Case of Exchangeable Sample ValuesRoman Andrushkiw, Dmitry Klyushin, V. N. Lysyuk, Yu I. Petunin. 486-489
• Stratification of General Populations and its Applications for Analysis of Resistant Tumour CellsRoman Andrushkiw, Dmitry Klyushin, Yu I. Petunin, A. German, M. Yu Savkina. 490-494
• The Biperiodic Table and Attributive Conception of Genetic Code: A Problem of Unification Bases of Biological LanguagesS. Petoukhov. 495-501
• Prediction of Sickle Cell Anemia Patient s Response to Hydroxyurea Treatment Using ARTMAP NetworkHongyu Xu, Faramarz Valafar, Marko Vuskovic. 502-508
• Digital Watermarking for Medical ImagesMariofanna G. Milanova, Charles Ford, Roumen Kountchev, Roumiana Kountcheva. 509-520
• AC Electrical Equivalent Circuit Model for Biological TissueMohammad Amin. 521-526
• Interpretation of Hidden Node Methodology in Automated Classification of Neural Cell MorphologyJung-Wook Bang, Alexandros Pappas, Duncan Fyfe Gillies, Stephen Muggleton. 527-532
• A Primary HealthCare Information System (PHeCIS)Mary Grammatikou, Vasilis Maglaris. 533