Table of Contents

• Riskoweb: Web-Based Genetic Profiling to Complex Disease Using Genome-Wide SNP MarkersSergio Torres-Sánchez, Rosana Montes-Soldado, Nuria Medina-Medina, Andrés R. Masegosa, María del Mar Abad-Grau. 1-8 [doi]
• MC64: A Web Platform to Test Bioinformatics Algorithms in a Many-Core ArchitectureFrancisco José Esteban, David Díaz, Pilar Hernández, Juan Antonio Caballero, Gabriel Dorado, Sergio Gálvez. 9-16 [doi]
• Integrating Medical Patient Data with Family Trees to Improve the Quality of InformationEliana Sousa, Tiago Jesus, Lina Neves, Mónica Isabel Teixeira Costa, Fernando Reinaldo Ribeiro, José Carlos Metrôlho, Ricardo Cruz-Correia. 17-22 [doi]
• Peptidase Detection and Classification Using Enhanced Kernel Methods with Feature SelectionLionel Morgado, Carlos Pereira, Paula Veríssimo, António Dourado. 23-30 [doi]
• Caenorhabditis ElegansAndreia Teixeira-Castro, Nuno Dias, Pedro Miguel Rodrigues, João Filipe Oliveira, Nuno F. Rodrigues, Patrícia Maciel, João L. Vilaça. 31-38 [doi]
• Workflows with Model Selection: A Multilocus Approach to Phylogenetic AnalysisJorge Álvarez, Roberto Blanco, Elvira Mayordomo. 39-47 [doi]
• Saccharomyces Cerevisiae Regulatory NetworkRicardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira. 49-56 [doi]
• ++ - Basic Bioinformatics Meta-searcherMárcio S. Carocho, Sérgio A. D. Deusdado. 57-62 [doi]
• Effective Parallelization of Non-bonded Interactions Kernel for Virtual Screening on GPUsGinés D. Guerrero, Horacio Emilio Pérez Sánchez, Wolfgang Wenzel, José M. Cecilia, José M. García. 63-69 [doi]
• Tracking B Cells from Two-Photon Microscopy Images Using Sequential Monte CarloDavid N. Olivieri, Iván Gómez-Conde, José Faro. 71-78 [doi]
• Coli Fermentation Process Using OptfermTânia Teixeira, Sérgio Deusdado. 79-82 [doi]
• An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing StudiesDaniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, David G. Pisano, Gonzalo Gómez-López. 83-86 [doi]
• Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing ExperimentsDaniel Glez-Peña, Osvaldo Graña, Florentino Fdez-Riverola, David G. Pisano. 87-91 [doi]
• EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical StudiesM. Márquez-Cid, G. Comesaña, R. Milne, G. Andrés, Núria Malats, David G. Pisano. 93-98 [doi]
• Building Proteomics Applications with the AIBench Application FrameworkMiguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José L. Capelo, Florentino Fdez-Riverola. 99-107 [doi]
• Neurohand Solving the Inverse Cinematic of an Anthropomorphic ArmMarina Beltrán-Blanco, Javier Molina-Vilaplana, José Luis Muñoz-Lozano, Juan López Coronado. 109-115 [doi]
• An Enhancement of the Usage of the Poincare Index for the Detection and Classification of Characteristic Points in DactylogramsAngélica González, Marco A. Ameller F.. 117-124 [doi]
• Modelling of Tirapazamine Effects on Solid Tumour MorphologyNabila Kazmi, M. Alamgir Hossain, Roger M. Phillips. 125-132 [doi]
• MOGA-Based Multi-drug Optimisation for Cancer ChemotherapyS. Algoul, Mohammad S. Alam, Kazi Sakib, M. Alamgir Hossain, M. A. A. Majumder. 133-140 [doi]
• Multi-drug Infusion Control Using Model Reference Adaptive AlgorithmSaleh Enbiya, M. Alamgir Hossain, Fatima Mahieddine. 141-148 [doi]
• Fast and Accurate Genome Anchoring Using Fuzzy Hash MapsJohn Healy, Desmond Chambers. 149-156 [doi]
• A Parallel Niched Pareto Evolutionary Algorithm for Multiple Sequence AlignmentFernando José Mateus da Silva, Juan Manuel Sánchez-Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez. 157-165 [doi]
• Phylogenetic Analysis Using an SMV ToolJosé Ignacio Requeno, Roberto Blanco, Gregorio de Miguel Casado, José Manuel Colom. 167-174 [doi]
• An Efficient Motif Search Algorithm Based on a Minimal Forbidden Patterns ApproachTarek El Falah, Thierry Lecroq, Mourad Elloumi. 175-182 [doi]
• Emerging Methodologies in Multiple Sequence Alignment Using High Throughput DataFrancisco M. Ortuño Guzman, Ignacio Rojas, Héctor Pomares, José M. Urquiza, J. P. Florido. 183-190 [doi]
• DNA Sequence Search Using Content-Based Image Search ApproachHeri Ramampiaro, Aleksander Grande. 191-199 [doi]
• Integrative Analysis of the Regulatory Region of the FGFR3 OncogeneJosep Bau, Marta Cullell, Jordi Solé-Casals. 201-204 [doi]
• Distances between Dinucleotides in the Human GenomeCarlos A. C. Bastos, Vera Afreixo, Armando J. Pinho, Sara P. Garcia, João M. O. S. Rodrigues, Paulo Jorge S. G. Ferreira. 205-211 [doi]
• Compressing the Human Genome Using Exclusively Markov ModelsDiogo Pratas, Armando J. Pinho. 213-220 [doi]
• Infantum Genomic Data Similarity MatricesVíctor Andrés Vera Ruiz, Liliana López Kleine. 221-228 [doi]
• Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple SclerosisAndré Valério Carreiro, Orlando Anunciação, João A. Carriço, Sara C. Madeira. 229-239 [doi]
• A Simulation Study on the Impact of Strong Dependence in High-Dimensional Multiple-Testing I: The Case without EffectsAntonio Carvajal-Rodríguez, Jacobo de Uña-Álvarez. 241-246 [doi]
• Perkinsus Olseni Up-Regulated Genes in Response to Its HostRita M. T. Ascenso. 247-253 [doi]
• Hybridization Dynamics Compensation in Microarray ExperimentsRaul Malutan, Pedro Gómez Vilda, Ioana Berindan Neagoe, Monica Borda. 255-261 [doi]
• Identification of Peptides with Deviating Regulation Factors Using a Robust Clustering SchemeNatalia Novoselova, Frank Klawonn, Thorsten Johl, Tobias Reinl, Lothar Jänsch. 263-270 [doi]
• Prediction of Protein Distance Maps by Assembling Fragments According to Physicochemical SimilaritiesGualberto Asencio Cortés, Jesús S. Aguilar-Ruiz, Alfonso E. Márquez Chamorro. 271-277 [doi]
• Residue-Residue Contact Prediction Based on Evolutionary ComputationAlfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Gualberto Asencio Cortés. 279-283 [doi]
• n-mer Statistics with Various Classification AlgorithmsMd. Saiful Islam 0003, Alaol Kabir, Kazi Sakib, M. Alamgir Hossain. 285-292 [doi]
• Relating Formalisms for the Qualitative Modelling of Regulatory NetworksBeatriz Luna, Claudine Chaouiya. 293-302 [doi]
• E. coli Metabolic PathwaysAnália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha. 303-312 [doi]
• E. coli SystemsSónia Carneiro, Eugénio C. Ferreira, Isabel Rocha. 313-320 [doi]
• Modeling Cellular Signaling Systems: An Abstraction-Refinement ApproachDiana Hermith, Carlos Olarte, Camilo Rueda, Frank D. Valencia. 321-328 [doi]
• A Study on the Robustness of Strain Optimization AlgorithmsPaulo Vilaça, Paulo Maia, Miguel Rocha. 329-336 [doi]
• Assessing the Suitability of MeSH Ontology for Classifying Medline DocumentsRosalia Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola. 337-344 [doi]
• Assessing the Impact of Class-Imbalanced Data for Classifying Relevant/Irrelevant Medline DocumentsReyes Pavón, Rosalia Laza, Miguel Reboiro-Jato, Florentino Fdez-Riverola. 345-353 [doi]
• Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug DesignRui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos J. V. Simões, Rui M. M. Brito. 355-363 [doi]
• Using Dictionaries for Biomedical Text ClassificationR. Romero, Eva Lorenzo Iglesias, Lourdes Borrajo, Carmen M. Redondo Marey. 365-372 [doi]
• Using Machine Learning Techniques and Genomic/Proteomic Information from Known Databases for PPI PredictionJosé M. Urquiza, Ignacio Rojas, Héctor Pomares, Luis Javier Herrera, J. P. Florido, Francisco M. Ortuño Guzman. 373-380 [doi]
• Prioritizing Literature Search Results Using a Training Set of Classified DocumentsSérgio Matos, José Luís Oliveira. 381-388 [doi]
• Improving Reproducibility on Tree Based Multimarker Methods: TreeDThJosé Javier Moreno-Ortega, Nuria Medina-Medina, Rosana Montes-Soldado, María del Mar Abad-Grau. 389-396 [doi]