Abstract is missing.
- Session IntroductionMaricel G. Kann, Yanay Ofran, Marco Punta, Predrag Radivojac. 1-3 [doi]
- Graph Kernels For Disease Outcome Prediction From Protein-Protein Interaction NetworksKarsten M. Borgwardt, Hans-Peter Kriegel. 4-15 [doi]
- Chalkboard: Ontology-Based Pathway Modeling And Qualitative Inference Of Disease MechanismsDaniel L. Cook, Jesse C. Wiley, John H. Gennari. 16-27 [doi]
- Mining Gene-Disease Relationships from Biomedical Literature: Weighting Proteinprotein Interactions and ConnectivityGraciela Gonzalez, Juan C. Uribe, Luis Tari, Colleen Brophy, Chitta Baral. 28-39 [doi]
- Predicting Structure and Dynamics of Loosely-Ordered Protein Complexes: Influenza Hemagglutinin Fusion PeptidePeter M. Kasson, Vijay S. Pande. 40-50 [doi]
- Protein Interactions and Disease Phenotypes in the ABC Transporter SuperfamilyLibusha Kelly, Rachel Karchin, Andrej Sali. 51-63 [doi]
- Lthreader: Prediction of Ligand-Receptor Interactions Using Localized ThreadingVinay Pulim, Jadwiga R. Bienkowska, Bonnie Berger. 64-75 [doi]
- Discovery of Protein Interaction Networks Shared by DiseasesLee T. Sam, Yang Liu, Jianrong Li, Carol Friedman, Yves A. Lussier. 76-87 [doi]
- An Iterative Algorithm for Metabolic Network-Based Drug Target IdentificationPadmavati Sridhar, Tamer Kahveci, Sanjay Ranka. 88-99 [doi]
- Transcriptional Interactions During Smallpox Infection and Identification of Early Infection BiomarkersWilly Valdivia Granda, Maricel G. Kann, Jose Malaga. 100-111 [doi]
- Session IntroductionDavid S. Wishart, Russell Greiner. 112-114 [doi]
- Leveraging Latent Information In NMR For Robust Predictive ModelsDavid Chang, Aalim Weljie, Jack Newton. 115-126 [doi]
- Bioinformatics Data Profiling Tools: A Prelude to Metabolic ProfilingNatarajan Ganesan, Bala Kalyanasundaram, Mahe Velauthapllai. 127-132 [doi]
- Comparative QSAR Analysis of Bacterial-, Fungalplant- and Human MetabolitesEmre Karakoç, Süleyman Cenk Sahinalp, Artem Cherkasov. 133-144 [doi]
- Biospider: A Web Server for Automating Metabolome AnnotationsCraig Knox, Savita Shrivastava, Paul Stothard, Roman Eisner, David S. Wishart. 145-156 [doi]
- New Bioinformatics Resources For MetabolomicsJohn L. Markley, Mark E. Anderson, Qiu Cui, Hamid Eghbalnia, Ian A. Lewis, Adrian D. Hegeman, Jing Li, Christopher F. Schulte, Michael R. Sussman, William M. Westler, Eldon L. Ulrich, Zsolt Zolnai. 157-168 [doi]
- Setup X - A Public Study Design Database for Metabolomic ProjectsMartin Scholz, Oliver Fiehn. 169-180 [doi]
- Comparative Metabolomics of Breast CancerChen Yang, Adam D. Richardson, Jeffrey W. Smith, Andrei Osterman. 181-192 [doi]
- Metabolic Flux Profiling of Reaction Modules in Liver Drug TransformationJeongah Yoon, Kyongbum Lee. 193-204 [doi]
- Session IntroductionPierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, K. Bretonnel Cohen. 205-208 [doi]
- Extracting Semantic Predications from Medline Citations for PharmacogenomicsCaroline B. Ahlers, Marcelo Fiszman, Dina Demner-Fushman, François-Michel Lang, Thomas C. Rindflesch. 209-220 [doi]
- Annotating Genes Using Textual PatternsAli Cakmak, Gultekin Özsoyoglu. 221-232 [doi]
- A Fault Model for Ontology Mapping, Alignment, and Linking SystemsHelen L. Johnson, K. Bretonnel Cohen, Lawrence Hunter. 233-268 [doi]
- Integrating Natural Language Processing with Flybase CurationNikiforos Karamanis, Ian Lewin, Ruth Seal, Rachel A. Drysdale, Edward John Briscoe. 245-256 [doi]
- A Stacked Graphical Model for Associating Sub-Images with Sub-CaptionsZhenzhen Kou, William W. Cohen, Robert F. Murphy. 257-268 [doi]
- Generif Quality Assurance as Summary RevisionZhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter. 269-280 [doi]
- Evaluating the Automatic Mapping of Human Gene and Protein Mentions to Unique IdentifiersAlexander A. Morgan, Benjamin Wellner, Jeffrey B. Colombe, Robert Arens, Marc E. Colosimo, Lynette Hirschman. 281-291 [doi]
- Multiple Approaches to Fine-Grained Indexing of the Biomedical LiteratureAurélie Névéol, Sonya E. Shooshan, Susanne M. Humphrey, Thomas C. Rindflesch, Alan R. Aronson. 292-303 [doi]
- Mining Patents Using Molecular Similarity SearchJames Rhodes, Stephen Boyer, Jeffrey T. Kreulen, Ying Chen, Patricia Ordonez. 304-315 [doi]
- Discovering Implicit Associations Between Genes and Hereditary DiseasesKazuhiro Seki, Javed Mostafa. 316-327 [doi]
- A Cognitive Evaluation of Four Online Search Engines for Answering Definitional Questions Posed by PhysiciansHong Yu, David Kaufman. 328-339 [doi]
- Session IntroductionIndra Neil Sarkar. 340-342 [doi]
- Biomediator Data Integration and Inference for Functional Annotation of Anonymous SequencesEithon Cadag, Brenton Louie, Peter J. Myler, Peter Tarczy-Hornoch. 343-354 [doi]
- Absent Sequences: Nullomers and PrimesGregory Hampikian, Tim Andersen. 355-366 [doi]
- An Anatomical Ontology for AmphibiansAnne M. Maglia, Jennifer L. Leopold, L. Anal a Pugener, Susan Gauch. 367-378 [doi]
- Recommending Pathway Genes Using a Compendium of Clustering SolutionsDavid M. Ng, Marcos H. Woehrmann, Joshua M. Stuart. 379-390 [doi]
- Semi-Automated XML Markup of Biosystematic Legacy Literature with the Goldengate EditorGuido Sautter, Klemens Böhm, Donat Agosti. 391-402 [doi]
- Session IntroductionWilliam R. Cannon, Bobbie-Jo M. Webb-Robertson. 403-408 [doi]
- Advancement in Protein Inference from Shotgun Proteomics Using Peptide DetectabilityPedro Alves, Randy J. Arnold, Milos V. Novotny, Predrag Radivojac, James P. Reilly, Haixu Tang. 409-420 [doi]
- Mining Tandem Mass Spectral Data to Develop a More Accurate Mass Error Model for Peptide IdentificationYan Fu, Wen Gao, Simin He, Ruixiang Sun, Hu Zhou, Rong Zeng. 421-432 [doi]
- Assessing and Combining Reliability of Protein Interaction SourcesSonia M. Leach, Aaron Gabow, Lawrence Hunter, Debra Goldberg. 433-444 [doi]
- Probabilistic Modeling of Systematic Errors in Two-Hybrid ExperimentsDavid Sontag, Rohit Singh, Bonnie Berger. 445-457 [doi]
- Prospective Exploration of Biochemical Tissue Composition via Imaging Mass Spectrometry Guided by Principal Component AnalysisRaf Van de Plas, Fabian Ojeda, Maarten Dewil, Ludo Van Den Bosch, Bart De Moor, Etienne Waelkens. 458-469 [doi]
- Session IntroductionMartha L. Bulyk, Alexander J. Hartemink, Ernest Fraenkel, Gary D. Stormo. 470-471 [doi]
- Discovering Motifs With Transcription Factor Domain KnowledgeHenry C. M. Leung, Francis Y. L. Chin, Bethany Man-Yee Chan. 472-483 [doi]
- Ab initio Prediction of Transcription Factor Binding SitesL. Angela Liu, Joel S. Bader. 484-495 [doi]
- Comparative Pathway Annotation with Protein-DNA Interaction and Operon Information via Graph Tree DecompositionJizhen Zhao, Dongsheng Che, Liming Cai. 496-507 [doi]