Table of Contents

• Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profilesSamuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, Isaac S. Kohane. [doi]
• How Much Does the (Social) Environment Matter? Using Artificial Intelligence to Predict COVID-19 Outcomes with Socio-demographic DataChristos A. Makridis, Anish Mudide, Gil Alterovitz. [doi]
• Raising the stakeholders: Improving patient outcomes through interprofessional collaborations in AI for healthcareCarly A. Bobak, Marek Svoboda, Kristine A. Giffin, Dennis P. Wall, Jason H. Moore. [doi]
• Making Compassionate Use More Useful: Using real-world data, real-world evidence and digital twins to supplement or supplant randomized controlled trialsDov Greenbaum. [doi]
• TrueImage: A Machine Learning Algorithm to Improve the Quality of Telehealth PhotosKailas Vodrahalli, Roxana Daneshjou, Roberto A. Novoa, Albert Chiou, Justin M. Ko, James Zou. [doi]
• AeQTL: eQTL analysis using region-based aggregation of rare genomic variantsGuanlan Dong, Michael C. Wendl, Bin Zhang, Li Ding, Kuan-Lin Huang. [doi]
• Drug Response Pharmacogenetics for 200, 000 UK Biobank ParticipantsGregory McInnes, Russ B. Altman. [doi]
• Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysisGerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky. [doi]
• Semi-automated NMR Pipeline for Environmental Exposures: New Insights on the Metabolomics of Smokers versus Non-smokersMorris A. Aguilar, John A. S. McGuigan, Molly A. Hall. [doi]
• Optimization of Genomic Classifiers for Clinical Deployment: Evaluation of Bayesian Optimization to Select Predictive Models of Acute Infection and In-Hospital MortalityMichael B. Mayhew, Elizabeth Tran, Kirindi Choi, Uros Midic, Roland Lüthy, Nandita Damaraju, Ljubomir J. Buturovic. [doi]
• Differential Privacy Protection Against Membership Inference Attack on Machine Learning for Genomic DataJunjie Chen, Wendy Hui Wang, Xinghua Shi. [doi]
• Selection of trustworthy crowd workers for telemedical diagnosis of pediatric autism spectrum disorderPeter Washington, Émilie Leblanc, Kaitlyn Dunlap, Yordan Penev, Maya Varma, Jae-Yoon Jung, Brianna Sierra Chrisman, Min Woo Sun, Nate Tyler Stockham, Kelley Marie Paskov, Haik Kalantarian, Catalin Voss, Nick Haber, Dennis P. Wall. [doi]
• Establishing the reliability of algorithmsLara Mangravite, Sean D. Mooney, Iddo Friedberg, Justin Guinney. [doi]
• Co-occurrence Patterns of Intimate Partner ViolenceAhmet Mert Hacialiefendioglu, Serhan Yilmaz, Mehmet Koyutürk, Gunnur Karakurt. [doi]
• SARS-CoV-2 Drug Discovery based on Intrinsically Disordered RegionsAnish Mudide, Gil Alterovitz. [doi]
• Frequent Subgraph Mining of Functional Interaction Patterns Across Multiple CancersArda Durmaz, Tim A. D. Henderson, Gürkan Bebek. [doi]
• Advanced Methods for Big Data Analytics in Women's HealthMary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez. [doi]
• TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network InferenceSamuel Sledzieski, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal. [doi]
• Characterization of Anonymous Physician Perspectives on COVID-19 Using Social Media DataKatherine J. Sullivan, Marisha Burden, Angela Keniston, Juan M. Banda, Lawrence E. Hunter. [doi]
• A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarkerMadeleine Scott, Maneesha Limaye, Steven Schaffert, Robert West, Michael G. Ozawa, Pauline Chu, Viswam S. Nair, Albert C. Koong, Purvesh Khatri. [doi]
• ParKCa: Causal Inference with Partially Known CausesRaquel Aoki, Martin Ester. [doi]
• Topological Feature Extraction and Visualization of Whole Slide Images using Graph Neural NetworksJoshua Levy, Christian Haudenschild, Clark Barwick, Brock C. Christensen, Louis J. Vaickus. [doi]
• Making Tools that People Will Use: User-Centered Design in Computational Biology ResearchMary Goldman, Nils Gehlenborg. [doi]
• CheXclusion: Fairness gaps in deep chest X-ray classifiersLaleh Seyyed-Kalantari, Guanxiong Liu, Matthew B. A. McDermott, Irene Y. Chen, Marzyeh Ghassemi. [doi]
• Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillienceLenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam. [doi]
• What about the environment? Leveraging multi-omic datasets to characterize the environment's role in human healthKristin Passero, Shefali Setia Verma, Kimberly McAllister, Arjun Manrai, Chirag J. Patel, Molly A. Hall. [doi]
• Semantic Changepoint Detection for Finding Potentially Novel Research PublicationsBhavish Dinakar, Mayla Boguslav, Carsten Görg, Deendayal Dinakarpandian. [doi]
• Intimate Partner Violence and Injury Prediction From Radiology ReportsIrene Y. Chen, Emily Alsentzer, Hyesun Park, Richard Thomas, Babina Gosangi, Rahul Gujrathi, Bharti Khurana. [doi]
• Translational Bioinformatics: Integrating Electronic Health Record and Omics DataDokyoon Kim, Ju Han Kim, Jason H. Moore. [doi]
• AI for infectious disease modelling and therapeuticsGil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker. [doi]
• Innovative methodological approaches for data integration to derive patterns across diverse, large-scale biomedical datasetsBrett Beaulieu-Jones, Christian Darabos, Dokyoon Kim, Anurag Verma, Shilpa Nadimpalli Kobren. [doi]
• Computational Challenges and Artificial Intelligence in Precision MedicineOlga Afanasiev, Joanne Berghout, Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jonathan H. Chen, Roxana Daneshjou, Lukasz Kidzinski. [doi]
• Achieving Trustworthy Biomedical Data SolutionsPeter Washington, Serena Yeung, Bethany Percha, Nicholas P. Tatonetti, Jan Liphardt, Dennis P. Wall. [doi]
• Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactomeMeghana Kshirsagar 0001, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali 0001, Juan M. Lavista Ferres, Gregory R. Bowman, Judith Klein-Seetharaman. [doi]
• Incorporation of DNA methylation into eQTL mapping in African AmericansAnmol Singh, Yizhen Zhong, Layan Nahlawi, Sehwan Park, Tanima De, Cristina Alarcon, Minoli Perera. [doi]
• Not All C-sections Are the Same: Investigating Emergency vs. Elective C-section deliveries as an Adverse Pregnancy OutcomeSilvia P. Canelón, Mary Regina Boland. [doi]