Graciela Gonzalez-Hernandez

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Viewing Publication 1 - 32 from 32

2023

ChatGPT and large language models in academia: opportunities and challengesJesse G. Meyer, Ryan J. Urbanowicz, Patrick C. N. Martin, Karen O'Connor, Ruowang Li, Pei-Chen Peng, Tiffani J. Bright, Nicholas P. Tatonetti, Kyoung-Jae Won, Graciela Gonzalez-Hernandez, Jason H. Moore. biodatamining, 16(1), January 2023. [doi]

2022

2021

Text classification models for the automatic detection of nonmedical prescription medication use from social mediaMohammed Ali Al-garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker. midm, 21(1):27, 2021. [doi]

Advanced Methods for Big Data Analytics in Women's HealthMary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez. psb 2020: [doi]

DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on TwitterArjun Magge, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova, Anne Dirkson, Suzan Verberne, Davy Weissenbacher, Graciela Gonzalez-Hernandez. jamia, 28(10):2184-2192, 2021. [doi]

Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez. smm4h 2021: 21-32 [doi]

Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User TimelinesDavy Weissenbacher, Siddharth Rawal, Arjun Magge, Graciela Gonzalez-Hernandez. aime 2021: 93-102 [doi]

Active neural networks to detect mentions of changes to medication treatment in social mediaDavy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez. jamia, 28(12):2551-2561, 2021. [doi]

2020

Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez. smm4h 2020: 27-36 [doi]

UPennHLP at WNUT-2020 Task 2 : Transformer models for classification of COVID19 posts on TwitterArjun Magge, Varad Pimpalkhute, Divya Rallapalli, David Siguenza, Graciela Gonzalez-Hernandez. aclnut 2020: 378-382 [doi]

GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeographyArjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch. bioinformatics, 36(20):5120-5121, 2020. [doi]

Ideas for how informaticians can get involved with COVID-19 researchJason H. Moore, Ian Barnett, Mary Regina Boland, Yong Chen 0016, George Demiris, Graciela Gonzalez-Hernandez, Daniel S. Herman, Blanca E. Himes, Rebecca A. Hubbard, Dokyoon Kim, Jeffrey S. Morris, Danielle L. Mowery, Marylyn D. Ritchie, Li Shen 0001, Ryan J. Urbanowicz, John H. Holmes. biodatamining, 13(1):3, 2020. [doi]

2019

Disease associations depend on visit type: results from a visit-wide association studyMary Regina Boland, Snigdha Alur-Gupta, Lisa Levine, Peter Gabriel, Graciela Gonzalez-Hernandez. biodatamining, 12(1), 2019. [doi]

Towards scaling Twitter for digital epidemiology of birth defectsAri Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez. npjdm, 2, 2019. [doi]

Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical LiteratureArjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez. psb 2019: 100-111 [doi]

Comment on: "Deep learning for pharmacovigilance: recurrent neural network architectures for labeling adverse drug reactions in Twitter posts"Arjun Magge, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez. jamia, 26(6):577-579, 2019. [doi]

Towards Automating Location-Specific Opioid Toxicosurveillance from Twitter via Data Science MethodsAbeed Sarker, Graciela Gonzalez-Hernandez, Jeanmarie Perrone. medinfo 2019: 333-337 [doi]

An interpretable natural language processing system for written medical examination assessmentAbeed Sarker, Ari Z. Klein, Janet Mee, Polina Harik, Graciela Gonzalez-Hernandez. jbi, 98, 2019. [doi]

SemEval-2019 Task 12: Toponym Resolution in Scientific PapersDavy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez. semeval 2019: 907-916 [doi]

Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez. smm4h 2019: 21-30 [doi]

Deep neural networks ensemble for detecting medication mentions in tweetsDavy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez. jamia, 26(12):1618-1626, 2019. [doi]

2018

Session IntroductionGraciela Gonzalez-Hernandez, Abeed Sarker, Karen O'Connor, Casey S. Greene, Hongfang Liu. psb 2018: 559-565 [doi]

Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on TwitterAri Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez. jbi, 87:68-78, 2018. [doi]

Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest ClassifiersArjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez. medaded 2018: 25-30 [doi]

Deep neural networks and distant supervision for geographic location mention extractionArjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez. bioinformatics, 34(13), 2018. [doi]

Dealing with Medication Non-Adherence Expressions in TwitterTakeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez. smm4h 2018: 32-33 [doi]

An unsupervised and customizable misspelling generator for mining noisy health-related text sourcesAbeed Sarker, Graciela Gonzalez-Hernandez. jbi, 88:98-107, 2018. [doi]

Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared taskAbeed Sarker, Maksim Belousov, Jasper Friedrichs, Kai Hakala, Svetlana Kiritchenko, Farrokh Mehryary, Sifei Han, Tung Tran, Anthony Rios, Ramakanth Kavuluru, Berry de Bruijn, Filip Ginter, Debanjan Mahata, Saif M. Mohammad, Goran Nenadic, Graciela Gonzalez-Hernandez. jamia, 25(10):1274-1283, 2018. [doi]

GeoBoost: accelerating research involving the geospatial metadata of virus GenBank recordsTasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez. bioinformatics, 34(9):1606-1608, 2018. [doi]

Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018Davy Weissenbacher, Abeed Sarker, Michael J. Paul, Graciela Gonzalez-Hernandez. smm4h 2018: 13-16 [doi]

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