Abstract is missing.
- Predicting Genetic Regulatory Response Using Classification: Yeast Stress ResponseManuel Middendorf, Anshul Kundaje, Chris Wiggins, Yoav Freund, Christina S. Leslie. 1-13 [doi]
- Detecting Functional Modules of Transcription Factor Binding Sites in the Human GenomeThomas Manke, Christoph Dieterich, Martin Vingron. 14-21 [doi]
- Fishing for Proteins in the Pacific NorthwestWilliam Krivan. 22-29 [doi]
- PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic InformationRahul Siddharthan, Erik van Nimwegen, Eric D. Siggia. 30-41 [doi]
- Application of Kernel Method to Reveal Subtypes of TF Binding MotifsAlexander E. Kel, Yuri Tikunov, Nico Voss, Jürgen Borlak, Edgar Wingender. 42-51 [doi]
- Learning Regulatory Network Models that Represent Regulator States and RolesKeith Noto, Mark Craven. 52-64 [doi]
- Using Expression Data to Discover RNA and DNA Regulatory Sequence MotifsChaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini. 65-78 [doi]
- Parameter Landscape Analysis for Common Motif Discovery ProgramsNatalia Polouliakh, Michiko Konno, Paul Horton, Kenta Nakai. 79-87 [doi]
- Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression DataVladimir Filkov, Nameeta Shah. 88-97 [doi]
- Modeling and Analysis of Heterogeneous Regulation in Biological NetworksIrit Gat-Viks, Amos Tanay, Ron Shamir. 98-113 [doi]