Thomas Manke - researchr alias

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Viewing Publication 1 - 14 from 14

2021

pyGenomeTracks: reproducible plots for multivariate genomic datasetsLucille Lopez-Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn A. Grüning, Fidel Ramírez, Thomas Manke. bioinformatics, 37(3):422-423, 2021. [doi]

2020

Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualizationJoachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A. Grüning. nar, 48(Webserver-Issue), 2020. [doi]

2019

2018

Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualizationJoachim Wolff, Vivek Bhardwaj, Stephan Nothjunge, Gautier Richard, Gina Renschler, Ralf Gilsbach, Thomas Manke, Rolf Backofen, Fidel Ramírez, Björn A. Grüning. nar, 46(Webserver-Issue), 2018. [doi]

2017

Alu invasion of the human genomeTugçe Aktas, Ibrahim Avsar Ilik, Daniel Maticzka, Vivek Bhardwaj, Cecilia Pessoa Rodrigues, Gerhard Mittler, Thomas Manke, Rolf Backofen, Asifa Akhtar. nature, 544(7648):115-119, 2017. [doi]

2016

deepTools2: a next generation web server for deep-sequencing data analysisFidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. nar, 44(Webserver-Issue), 2016. [doi]

2014

deepTools: a flexible platform for exploring deep-sequencing dataFidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A. Grüning, Thomas Manke. nar, 42(Webserver-Issue):187-191, 2014. [doi]

2013

ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretationMaxim Barenboim, Thomas Manke. bioinformatics, 29(17):2197-2198, 2013. [doi]

2009

PASTAA: identifying transcription factors associated with sets of co-regulated genesHelge G. Roider, Thomas Manke, Sean O Keeffe, Martin Vingron, Stefan A. Haas. bioinformatics, 25(4):435-442, 2009. [doi]

2008

Prioritization of gene regulatory interactions from large-scale modules in yeastHo-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron. bmcbi, 9, 2008. [doi]

Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory InteractionsThomas Manke, Helge G. Roider, Martin Vingron. ploscb, 4(3), 2008. [doi]

2007

Predicting transcription factor affinities to DNA from a biophysical modelHelge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron. bioinformatics, 23(2):134-141, 2007. [doi]

2004

Detecting Functional Modules of Transcription Factor Binding Sites in the Human GenomeThomas Manke, Christoph Dieterich, Martin Vingron. recomb 2005: 14-21 [doi]

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