Abstract is missing.
- Long Reads Enable Accurate Estimates of Complexity of MetagenomesAnton Bankevich, Pavel A. Pevzner. 1-20 [doi]
- Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing DataShounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz. 21-36 [doi]
- GTED: Graph Traversal Edit DistanceAli Ebrahimpour Boroojeny, Akash Shrestha, Ali Sharifi-Zarchi, Suzanne Renick Gallagher, Süleyman Cenk Sahinalp, Hamidreza Chitsaz. 37-53 [doi]
- Statistical Inference of Peroxisome DynamicsCyril Galitzine, Pierre M. Jean Beltran, Ileana M. Cristea, Olga Vitek. 54-74 [doi]
- Loss-Function Learning for Digital Tissue DeconvolutionFranziska Görtler, Stefan Solbrig, Tilo Wettig, Peter J. Oefner, Rainer Spang, Michael Altenbuchinger. 75-89 [doi]
- Inference of Population Structure from Ancient DNATyler A. Joseph, Itsik Pe'er. 90-104 [doi]
- Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-linear Chaining ExtendedAnna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi, Alexandru I. Tomescu, Veli Mäkinen. 105-121 [doi]
- Modeling Dependence in Evolutionary Inference for ProteinsGary Larson, Jeffrey L. Thorne, Scott C. Schmidler. 122-137 [doi]
- Constrained De Novo Sequencing of neo-Epitope Peptides Using Tandem Mass SpectrometrySujun Li, Alex DeCourcy, Haixu Tang. 138-153 [doi]
- Reverse de Bruijn: Utilizing Reverse Peptide Synthesis to Cover All Amino Acid k-mersYaron Orenstein. 154-166 [doi]
- Circular Networks from Distorted MetricsSebastien Roch, Kun-Chieh Wang. 167-176 [doi]
- A Nested 2-Level Cross-Validation Ensemble Learning Pipeline Suggests a Negative Pressure Against Crosstalk snoRNA-mRNA Interactions in Saccharomyces CerevisaeAntoine Soulé, Jean-Marc Steyaert, Jérôme Waldispühl. 177-193 [doi]
- Context-Specific Nested Effects ModelsYuriy Sverchkov, Yi-Hsuan Ho, Audrey Gasch, Mark Craven. 194-210 [doi]
- Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence AnalysisSharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru. 211-224 [doi]
- Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference GenomesZhemin Zhou, Nina Luhmann, Nabil-Fareed Alikhan, Christopher Quince, Mark Achtman. 225-240 [doi]
- Targeted Genotyping of Variable Number Tandem Repeats with AdVNTRMehrdad Bakhtiari, Sharona Shleizer-Burko, Melissa Gymrek, Vikas Bansal, Vineet Bafna. 243-244 [doi]
- Positive-Unlabeled Convolutional Neural Networks for Particle Picking in Cryo-electron MicrographsTristan Bepler, Andrew Morin, Alex J. Noble, Julia Brasch, Lawrence Shapiro, Bonnie Berger. 245-247 [doi]
- Designing RNA Secondary Structures Is HardÉdouard Bonnet, Pawel Rzazewski, Florian Sikora. 248-250 [doi]
- Generalizable Visualization of Mega-Scale Single-Cell DataHyunghoon Cho, Bonnie Berger, Jian Peng 0001. 251-253 [doi]
- Probabilistic Count Matrix Factorization for Single Cell Expression Data AnalysisGhislain Durif, Laurent Modolo, Jeff E. Mold, Sophie Lambert-Lacroix, Franck Picard. 254-255 [doi]
- Fixed-Parameter Tractable Sampling for RNA Design with Multiple Target StructuresStefan Hammer, Yann Ponty, Wei Wang, Sebastian Will. 256-258 [doi]
- Contribution of Structural Variation to Genome Structure: TAD Fusion Discovery and RankingLinh Huynh, Fereydoun Hormozdiari. 259-260 [doi]
- Assembly of Long Error-Prone Reads Using Repeat GraphsMikhail Kolmogorov, Jeffrey Yuan, Yu Lin, Pavel A. Pevzner. 261-262 [doi]
- A Multi-species Functional Embedding Integrating Sequence and Network StructureMark D. M. Leiserson, Jason Fan, Anthony Cannistra, Inbar Fried, Tim Lim, Thomas Schaffner, Mark Crovella, Benjamin J. Hescott. 263-265 [doi]
- Deciphering Signaling Specificity with Deep Neural NetworksYunan Luo, Jianzhu Ma, Yang Liu 0097, Qing Ye, Trey Ideker, Jian Peng 0001. 266-268 [doi]
- Integrative Inference of Subclonal Tumour Evolution from Single-Cell and Bulk Sequencing DataSalem Malikic, Katharina Jahn, Jack Kuipers, Süleyman Cenk Sahinalp, Niko Beerenwinkel. 269-270 [doi]
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search IndexPrashant Pandey, Fatemeh Almodaresi, Michael A. Bender, Michael Ferdman, Rob Johnson, Robert Patro. 271-273 [doi]
- Tensor Composition Analysis Detects Cell-Type Specific Associations in Epigenetic StudiesElior Rahmani, Regev Schweiger, Saharon Rosset, Sriram Sankararaman, Eran Halperin. 274-275 [doi]
- Assembly-Free and Alignment-Free Sample Identification Using Genome SkimsShahab Sarmashghi, Kristine Bohmann, M. Thomas P. Gilbert, Vineet Bafna, Siavash Mirarab. 276-277 [doi]
- Efficient Algorithms to Discover Alterations with Complementary Functional Association in CancerRebecca Sarto Basso, Dorit S. Hochbaum, Fabio Vandin. 278-279 [doi]
- Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream AnalysesAriya Shajii, Ibrahim Numanagic, Bonnie Berger. 280-282 [doi]
- ModulOmics: Integrating Multi-Omics Data to Identify Cancer Driver ModulesDana Silverbush, Simona Cristea, Gali Yanovich, Tamar Geiger, Niko Beerenwinkel, Roded Sharan. 283-284 [doi]
- SCIΦ: Single-Cell Mutation Identification via Phylogenetic InferenceJochen Singer, Jack Kuipers, Katharina Jahn, Niko Beerenwinkel. 285-286 [doi]
- AptaBlocks: Accelerating the Design of RNA-Based Drug Delivery SystemsYijie Wang, Jan Hoinka, Piotr Swiderski, Teresa M. Przytycka. 287-288 [doi]
- A Unifying Framework for Summary Statistic ImputationYue Wu, Eleazar Eskin, Sriram Sankararaman. 289-290 [doi]
- Characterizing Protein-DNA Binding Event Subtypes in ChIP-Exo DataNaomi Yamada, William K. M. Lai, Nina Farrell, B. Franklin Pugh, Shaun Mahony. 291-292 [doi]
- Continuous-Trait Probabilistic Model for Comparing Multi-species Functional Genomic DataYang Yang, Quanquan Gu, Takayo Sasaki, Julianna Crivello, Rachel O'Neill, David M. Gilbert, Jian Ma 0004. 293-294 [doi]
- Deep Learning Reveals Many More Inter-protein Residue-Residue Contacts than Direct Coupling AnalysisTian-Ming Zhou, Sheng Wang, Jinbo Xu. 295-296 [doi]