Abstract is missing.
- Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order DataJoel V. Earnest-DeYoung, Emmanuelle Lerat, Bernard M. E. Moret. 1-13 [doi]
- Reconstructing Ancestral Gene Orders Using Conserved IntervalsAnne Bergeron, Mathieu Blanchette, Annie Chateau, Cedric Chauve. 14-25 [doi]
- Sorting by Reversals with Common IntervalsMartin Figeac, Jean-Stéphane Varré. 26-37 [doi]
- A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map PatternsJens Gramm. 38-49 [doi]
- A 1.5-Approximation Algorithm for Sorting by Transpositions and TransreversalsTzvika Hartman, Roded Sharan. 50-61 [doi]
- Algorithms for Finding Maximal-Scoring Segment Sets (Extended Abstract)Miklós Csürös. 62-73 [doi]
- Gapped Local Similarity Search with Provable GuaranteesManikandan Narayanan, Richard M. Karp. 74-86 [doi]
- Monotone Scoring of Patterns with Mismatches: (Extended Abstract)Alberto Apostolico, Cinzia Pizzi. 87-98 [doi]
- Suboptimal Local Alignments Across Multiple Scoring SchemesMorris Michael, Christoph Dieterich, Jens Stoye. 99-110 [doi]
- A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr StatisticUri Keich, Niranjan Nagarajan. 111-122 [doi]
- Adding Hidden Nodes to Gene Networks (Extended Abstract)Benny Chor, Tamir Tuller. 123-134 [doi]
- Joint Analysis of DNA Copy Numbers and Gene Expression LevelsDoron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini. 135-146 [doi]
- Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic FootprintingDaichi Shigemizu, Osamu Maruyama. 147-158 [doi]
- Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence AnnotationLev Soinov, Alexander Kanapin, Misha Kapushesky. 159-169 [doi]
- Multiple Vector Seeds for Protein AlignmentDaniel G. Brown. 170-181 [doi]
- Solving the Protein Threading Problem by Lagrangian RelaxationStefan Balev. 182-193 [doi]
- Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical OrganizationsAlexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson. 194-205 [doi]
- ATDD: An Algorithmic Tool for Domain Discovery in Protein SequencesStanislav Angelov, Sanjeev Khanna, Li Li, Fernando Pereira. 206-217 [doi]
- Local Search Heuristic for Rigid Protein DockingVicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunner, Johannes Rudolph. 218-229 [doi]
- Sequence Database Compression for Peptide Identification from Tandem Mass SpectraNathan Edwards, Ross Lippert. 230-241 [doi]
- Linear Reduction for Haplotype InferenceJingwu He, Alexander Zelikovsky. 242-253 [doi]
- A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype AnalysisDaniel G. Brown, Ian M. Harrower. 254-265 [doi]
- Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype ReconstructionAlessandro Panconesi, Mauro Sozio. 266-277 [doi]
- Approximation Algorithms for the Selection of Robust Tag SNPsYao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao. 278-289 [doi]
- The Minisatellite Transformation Problem Revisited: A Run Length Encoded ApproachBehshad Behzadi, Jean-Marc Steyaert. 290-301 [doi]
- A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through AlignmentJesper Jansson, See-Kiong Ng, Wing-Kin Sung, Hugo Willy. 302-313 [doi]
- New Algorithms for Multiple DNA Sequence AlignmentDaniel G. Brown, Alexander K. Hudek. 314-325 [doi]
- Chaining Algorithms for Alignment of Draft SequenceMukund Sundararajan, Michael Brudno, Kerrin Small, Arend Sidow, Serafim Batzoglou. 326-337 [doi]
- Translation Initiation Sites Prediction with Mixture Gaussian ModelsGuoliang Li, Tze-Yun Leong, Louxin Zhang. 338-349 [doi]
- Online Consensus and Agreement of Phylogenetic TreesTanya Y. Berger-Wolf. 350-361 [doi]
- Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-SpecificityMaciej Liskiewicz, Hemant J. Purohit, Dhananjay V. Raje. 362-373 [doi]
- Topological Rearrangements and Local Search Method for Tandem Duplication TreesDenis Bertrand, Olivier Gascuel. 374-387 [doi]
- Phylogenetic Super-networks from Partial TreesDaniel H. Huson, Tobias Dezulian, Tobias H. Klöpper, Mike A. Steel. 388-399 [doi]
- Genome Identification and Classification by Short Oligo ArraysStanislav Angelov, Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, Li-San Wang. 400-411 [doi]
- Novel Tree Edit Operations for RNA Secondary Structure ComparisonJulien Allali, Marie-France Sagot. 412-425 [doi]
- The Most Probable Labeling Problem in HMMs and Its Application to BioinformaticsBrona Brejová, Daniel G. Brown, Tomás Vinar. 426-437 [doi]
- Integrating Sample-Driven and Pattern-Driven Approaches in Motif FindingSing-Hoi Sze, Songjian Lu, Jianer Chen. 438-449 [doi]
- Finding Optimal Pairs of PatternsHideo Bannai, Heikki Hyyrö, Ayumi Shinohara, Masayuki Takeda, Kenta Nakai, Satoru Miyano. 450-462 [doi]
- Finding Missing PatternsShunsuke Inenaga, Teemu Kivioja, Veli Mäkinen. 463-474 [doi]