Abstract is missing.
- Shotgun Protein SequencingPavel A. Pevzner. 1 [doi]
- Locality Kernels for Protein ClassificationEvgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski. 2-11 [doi]
- When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global FeaturesRoy Varshavsky, Menachem Fromer, Amit Man, Michal Linial. 12-24 [doi]
- Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact MapsMarco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio. 25-37 [doi]
- Bringing Folding Pathways into Strand Pairing PredictionJieun K. Jeong, Piotr Berman, Teresa M. Przytycka. 38-48 [doi]
- A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low CoverageLoredana M. Genovese, Filippo Geraci, Marco Pellegrini. 49-60 [doi]
- Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association StudiesPhil Hyoun Lee, Hagit Shatkay. 61-72 [doi]
- Genotype Error Detection Using Hidden Markov Models of Haplotype DiversityJustin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc. 73-84 [doi]
- Haplotype Inference Via Hierarchical Genotype ParsingPasi Rastas, Esko Ukkonen. 85-97 [doi]
- Seeded Tree Alignment and Planar Tanglegram LayoutAntoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson. 98-110 [doi]
- Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution CriterionHadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller. 111-123 [doi]
- An ::::Omega::::(::::n:::::::2:::/log ::::n::::) Speed-Up of TBR Heuristics for the Gene-Duplication ProblemMukul S. Bansal, Oliver Eulenstein. 124-135 [doi]
- Incremental Discovery of Irredundant Motif Bases in Time ::::O::::(|::::Sigma::::| ::::n:::::::2::: log ::::n::::)Alberto Apostolico, Claudia Tagliacollo. 136-148 [doi]
- A Graph Clustering Approach to Weak Motif RecognitionChristina Boucher, Daniel G. Brown, Paul Church. 149-160 [doi]
- Informative Motifs in Protein Family AlignmentsHatice Gulcin Ozer, William C. Ray. 161-170 [doi]
- Topology Independent Protein Structural AlignmentJoe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang. 171-182 [doi]
- Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure PredictionGiuseppe Nicosia, Giovanni Stracquadanio. 183-193 [doi]
- Alignment-Free Local Structural Search by Writhe DecompositionDegui Zhi, Maxim Shatsky, Steven E. Brenner. 194-195 [doi]
- Defining and Computing Optimum RMSD for Gapped Multiple Structure AlignmentXueyi Wang, Jack Snoeyink. 196-207 [doi]
- Using Protein Domains to Improve the Accuracy of ::::Ab Initio:::: Gene FindingMihaela Pertea, Steven Salzberg. 208-215 [doi]
- Genomic Signatures in De Bruijn ChainsLenwood S. Heath, Amrita Pati. 216-227 [doi]
- Fast Kernel Methods for SVM Sequence ClassifiersPavel P. Kuksa, Vladimir Pavlovic. 228-239 [doi]
- On-Line Viterbi Algorithm for Analysis of Long Biological SequencesRastislav Srámek, Brona Brejová, Tomás Vinar. 240-251 [doi]
- Predicting Protein Folding Kinetics Via Temporal Logic Model CheckingChristopher James Langmead, Sumit Kumar Jha. 252-264 [doi]
- Efficient Algorithms to Explore Conformation Spaces of Flexible Protein LoopsAnkur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe. 265-276 [doi]
- Algorithms for the Extraction of Synteny Blocks from Comparative MapsVicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff. 277-288 [doi]
- Computability of Models for Sequence AssemblyPaul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno. 289-301 [doi]
- Fast Algorithms for Selecting Specific siRNA in Complete mRNA DataJaime Davila, Sudha Balla, Sanguthevar Rajasekaran. 302-309 [doi]
- RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper BoundChunmei Liu, Yinglei Song, Louis W. Shapiro. 310-322 [doi]
- HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical FoldingHosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao. 323-334 [doi]
- Homology Search with Fragmented Nucleic Acid Sequence PatternsAxel Mosig, Julian J.-L. Chen, Peter F. Stadler. 335-345 [doi]
- Fast Computation of Good Multiple Spaced SeedsLucian Ilie, Silvana Ilie. 346-358 [doi]
- Inverse Sequence Alignment from Partial ExamplesEagu Kim, John D. Kececioglu. 359-370 [doi]
- Novel Approaches in Psychiatric GenomicsMaja Bucan. 371 [doi]
- The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance QueriesFrancis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu. 372-382 [doi]
- Efficient Computational Design of Tiling Arrays Using a Shortest Path ApproachAlexander Schliep, Roland Krause. 383-394 [doi]
- Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping DataYonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi. 395-406 [doi]
- A Novel Method for Signal Transduction Network Inference from Indirect Experimental EvidenceRéka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks. 407-419 [doi]
- Composing Globally Consistent Pathway Parameter Estimates Through Belief PropagationGeoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan. 420-430 [doi]