Abstract is missing.
- Minimum Factorization Agreement of Spliced ESTsPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Raffaella Rizzi. 1-12 [doi]
- Annotating Fragmentation PatternsSebastian Böcker, Florian Rasche, Tamara Steijger. 13-24 [doi]
- biRNA: Fast RNA-RNA Binding Sites PredictionHamidreza Chitsaz, Rolf Backofen, Süleyman Cenk Sahinalp. 25-36 [doi]
- Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI NetworksPhuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester. 37-48 [doi]
- PMFastR: A New Approach to Multiple RNA Structure AlignmentDaniel DeBlasio, Jocelyne Bruand, Shaojie Zhang. 49-61 [doi]
- On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity MatricesPietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio. 62-72 [doi]
- Constructing Majority-Rule SupertreesJianrong Dong, David Fernández-Baca, Fred R. McMorris. 73-84 [doi]
- SCJ: A Variant of Breakpoint Distance for Which Sorting, Genome Median and Genome Halving Problems Are EasyPedro Feijão, João Meidanis. 85-96 [doi]
- A Simple, Practical and Complete ::::O::::(/frac::::n:::::::3::: log::::n::::)O(/frac{n^3}{ /log n})-Time Algorithm for RNA Folding Using the ::::Four-Russians:::: SpeedupYelena Frid, Dan Gusfield. 97-107 [doi]
- Back-Translation for Discovering Distant Protein HomologiesMarta Gîrdea, Laurent Noé, Gregory Kucherov. 108-120 [doi]
- A Markov Classification Model for Metabolic PathwaysTimothy Hancock, Hiroshi Mamitsuka. 121-132 [doi]
- Mimosa: Mixture Model of Co-expression to Detect Modulators of Regulatory InteractionMatthew Hansen, Logan Everett, Larry Singh, Sridhar Hannenhalli. 133-144 [doi]
- Phylogenetic Comparative AssemblyPeter Husemann, Jens Stoye. 145-156 [doi]
- K-Partite RNA Secondary StructuresMinghui Jiang, Pedro J. Tejada, Ramoni O. Lasisi, Shanhong Cheng, D. Scott Fechser. 157-168 [doi]
- Efficient Algorithms for Analyzing Segmental Duplications, Deletions, and Inversions in GenomesCrystal L. Kahn, Shay Mozes, Benjamin J. Raphael. 169-180 [doi]
- Predicting Gene Structures from Multiple RT-PCR TestsJakub Kovác, Tomás Vinar, Brona Brejová. 181-193 [doi]
- A Tree Based Method for the Rapid Screening of Chemical FingerprintsThomas G. Kristensen, Jesper Nielsen, Christian N. S. Pedersen. 194-205 [doi]
- Generalizing the Four Gamete Condition and Splits Equivalence Theorem: Perfect Phylogeny on Three State CharactersFumei Lam, Dan Gusfield, Srinath Sridhar. 206-219 [doi]
- Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant GenomesQian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner. 220-232 [doi]
- A General Framework for Local Pairwise Alignment Statistics with GapsPasi Rastas. 233-245 [doi]
- mpscan: Fast Localisation of Multiple Reads in GenomesEric Rivals, Leena Salmela, Petteri Kiiskinen, Petri Kalsi, Jorma Tarhio. 246-260 [doi]
- Fast Prediction of RNA-RNA InteractionRaheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp. 261-272 [doi]
- FlexSnap: Flexible Non-sequential Protein Structure AlignmentSaeed Salem, Mohammed J. Zaki, Chris Bystroff. 273-285 [doi]
- A Non-parametric Bayesian Approach for Predicting RNA Secondary StructuresKengo Sato, Michiaki Hamada, Toutai Mituyama, Kiyoshi Asai, Yasubumi Sakakibara. 286-297 [doi]
- homepages/84/1721 journals/jiis/BarbanconM07 conf/fqas/BarbanconM04 conf/bibe/NakhlehMBPD03 conf/ideas/BarbanconM02 Exact Score Distribution Computation for Similarity Searches in OntologiesMarcel H. Schulz, Sebastian Köhler, Sebastian Bauer, Martin Vingron, Peter N. Robinson. 298-309 [doi]
- Linear-Time Protein 3-D Structure Searching with Insertions and DeletionsTetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane. 310-320 [doi]
- Visualizing Phylogenetic Treespace Using Cartographic ProjectionsKenneth Sundberg, Mark J. Clement, Quinn Snell. 321-332 [doi]
- A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGenM. Shel Swenson, François Barbançon, C. Randal Linder, Tandy Warnow. 333-344 [doi]
- Aligning Biomolecular Networks Using Modular Graph KernelsFadi Towfic, M. Heather West Greenlee, Vasant Honavar. 345-361 [doi]
- MADMX: A Novel Strategy for Maximal Dense Motif ExtractionRoberto Grossi, Andrea Pietracaprina, Nadia Pisanti, Geppino Pucci, Eli Upfal, Fabio Vandin. 362-374 [doi]
- Large-Scale Neighbor-Joining with NINJATravis J. Wheeler. 375-389 [doi]
- A Unifying View on Approximation and FPT of Agreement ForestsChris Whidden, Norbert Zeh. 390-402 [doi]
- Structural Alignment of RNA with Complex Pseudoknot StructureThomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu. 403-414 [doi]
- Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary ModelsXiuwei Zhang, Bernard M. E. Moret. 415-428 [doi]