Ryan H. Lilien - researchr alias

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Viewing Publication 1 - 24 from 24

2012

Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSAMaria Safi, Ryan H. Lilien. jcisd, 52(6):1529-1541, 2012. [doi]

2011

2010

A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopyNavdeep Jaitly, Marcus A. Brubaker, John L. Rubinstein, Ryan H. Lilien. bioinformatics, 26(19):2406-2415, 2010. [doi]

Restricted dead-end elimination: Protein redesign with a bounded number of residue mutationsMaria Safi, Ryan H. Lilien. jcc, 31(6):1207-1215, 2010. [doi]

2009

The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand bindingIzhar Wallach, Ryan H. Lilien. bioinformatics, 25(5):615-620, 2009. [doi]

Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representationIzhar Wallach, Ryan H. Lilien. bioinformatics, 25(12), 2009. [doi]

Predicting Multiple Ligand Binding Modes Using Self-Consistent Pharmacophore HypothesesIzhar Wallach, Ryan H. Lilien. jcisd, 49(9):2116-2128, 2009. [doi]

2008

Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environmentClifton Forlines, Ryan H. Lilien. avi 2008: 367-371 [doi]

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensemblesIvelin Georgiev, Ryan H. Lilien, Bruce Randall Donald. jcc, 29(10):1527-1542, 2008. [doi]

2006

Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein designIvelin Georgiev, Ryan H. Lilien, Bruce Randall Donald. ismb 2006: 174-183 [doi]

A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular EnsemblesIvelin Georgiev, Ryan H. Lilien, Bruce Randall Donald. recomb 2006: 530-545 [doi]

2005

A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation EnzymeRyan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald. jcb, 12(6):740-761, 2005. [doi]

High-throughput inference of protein-protein interfaces from unassigned NMR dataRamgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald. ismb 2005: 292-301 [doi]

2004

2003

2001

Physical Geometric Algorithms for Structural Molecular BiologyBruce Randall Donald, Christopher Bailey-Kellogg, Jack Kelley, Ryan H. Lilien. icra 2001: 940-947

1999

View-Based Recognition Using an Eigenspace Approximation to the Hausdorff MeasureDaniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson. pami, 21(9):951-955, 1999. [doi]

1996

Object Recognition Using Subspace MethodsDaniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson. eccv 1996: 536-545

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