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Viewing Publication 1 - 85 from 85

2020

GREMA: modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problemMing-Ju Tsai, Jyun-Rong Wang, Shinn-Jang Ho, Li-Sun Shu, Wen-Lin Huang, Shinn-Ying Ho. bioinformatics, 36(12):3833-3840, 2020. [doi]

2018

Recognition-based character segmentation for multi-level writing stylePapangkorn Inkeaw, Jakramate Bootkrajang, Phasit Charoenkwan, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich. ijdar, 21(1-2):21-39, 2018. [doi]

Prediction of Metastasis in Head and Neck Cancer from Computed Tomography ImagesTzu-Yun Lo, Pei-Yin Wei, Chia-Heng Yen, Jiing-Feng Lirng, Muh-Hwa Yang, Pen-Yuan Chu, Shinn-Ying Ho. icrai 2018: 18-23 [doi]

2017

Recognition of handwritten Lanna Dhamma characters using a set of optimally designed moment featuresPapangkorn Inkeaw, Phasit Charoenkwan, Hui-Ling Huang, Sanparith Marukatat, Shinn-Ying Ho, Jeerayut Chaijaruwanich. ijdar, 20(4):259-274, 2017. [doi]

ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negativesJyun-Rong Wang, Wen-Lin Huang, Ming-Ju Tsai, Kai-Ti Hsu, Hui-Ling Huang, Shinn-Ying Ho. bioinformatics, 33(5):661-668, 2017. [doi]

2016

2015

GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotesYi-Hsiung Chen, Chi-Dung Yang, Ching-Ping Tseng, Hsien-Da Huang, Shinn-Ying Ho. bioinformatics, 31(13):2151-2158, 2015. [doi]

Discovery of prognostic biomarkers for predicting lung cancer metastasis using microarray and survival dataHui-Ling Huang, Yu-Chung Wu, Li-Jen Su, Yun-Ju Huang, Phasit Charoenkwan, Wen-Liang Chen, Hua-Chin Lee, William C. Chu, Shinn-Ying Ho. bmcbi, 16:54, 2015. [doi]

Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexesYerukala Sathipati Srinivasulu, Jyun-Rong Wang, Kai-Ti Hsu, Ming-Ju Tsai, Phasit Charoenkwan, Wen-Lin Huang, Hui-Ling Huang, Shinn-Ying Ho. bmcbi, 16(S18), December 2015. [doi]

SCMPSP: Prediction and characterization of photosynthetic proteins based on a scoring card methodTamara Vasylenko, Yi-Fan Liou, Hong-An Chen, Phasit Charoenkwan, Hui-Ling Huang, Shinn-Ying Ho. bmcbi, 16(S-1), 2015. [doi]

2014

SCMHBP: prediction and analysis of heme binding proteins using propensity scores of dipeptidesYi-Fan Liou, Phasit Charoenkwan, Yerukala Sathipati Srinivasulu, Tamara Vasylenko, Shih-Chung Lai, Hua-Chin Lee, Yi-Hsiung Chen, Hui-Ling Huang, Shinn-Ying Ho. bmcbi, 15(S-16), 2014. [doi]

2013

HCS-Neurons: identifying phenotypic changes in multi-neuron images upon drug treatments of high-content screeningPhasit Charoenkwan, Eric Hwang, Robert W. Cutler, Hua-Chin Lee, Li-Wei Ko, Hui-Ling Huang, Shinn-Ying Ho. bmcbi, 14(S-16), 2013. [doi]

Applying Cloud Computing Technologies to Gerontology and Geriatrics Health Care System (GGHCS)Tse-Chuan Hsu, Chih-Hung Chang, William C. Chu, Shinn-Ying Ho, Nien-Lin Hsueh, Wei-Bin Lee. qsic 2013: 355-360 [doi]

Designing predictors of halophilic and non-halophilic proteins using support vector machinesHui-Ling Huang, Yerukala Sathipati Srinivasulu, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho. cibcb 2013: 230-237 [doi]

Prediction of Mouse Senescence from HE-Stain Liver Images Using an Ensemble SVM ClassifierHui-Ling Huang, Ming-Hsin Hsu, Hua-Chin Lee, Phasit Charoenkwan, Shinn-Jang Ho, Shinn-Ying Ho. aciids 2013: 325-334 [doi]

EEG-based motion sickness classification system with genetic feature selectionLi-Wei Ko, Hua-Chin Lee, Shu-Fang Tsai, Tsung-Chin Shih, Ya-Ting Chuang, Hui-Ling Huang, Shinn-Ying Ho, Chin-Teng Lin. ccmb 2013: 158-164 [doi]

Predicting protein crystallization using a simple scoring card methodWatshara Shoombuatong, Hui-Ling Huang, Jeerayut Chaijaruwanich, Phasit Charoenkwan, Hua-Chin Lee, Shinn-Ying Ho. cibcb 2013: 23-30 [doi]

2012

2011

2009

2008

OPSO: Orthogonal Particle Swarm Optimization and Its Application to Task Assignment ProblemsShinn-Ying Ho, Hung-Sui Lin, Weei-Hurng Liauh, Shinn-Jang Ho. tsmc, 38(2):288-298, 2008. [doi]

Inferring S-system models of genetic networks from a time-series real data set of gene expression profilesHui-Ling Huang, Kuan-Wei Chen, Shinn-Jang Ho, Shinn-Ying Ho. cec 2008: 2788-2793 [doi]

ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localizationWen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang, Shinn-Ying Ho. bmcbi, 9, 2008. [doi]

ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localizationWen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shinn-Ying Ho. cibcb 2008: 201-206 [doi]

A Novel Intelligent Multiobjective Simulated Annealing Algorithm for Designing Robust PID ControllersMing-Hao Hung, Li-Sun Shu, Shinn-Jang Ho, Shiow-Fen Hwang, Shinn-Ying Ho. tsmc, 38(2):319-330, 2008. [doi]

Computational identification of ubiquitylation sites from protein sequencesChun-Wei Tung, Shinn-Ying Ho. bmcbi, 9, 2008. [doi]

2007

SODOCK: Swarm optimization for highly flexible protein-ligand dockingHung-Ming Chen, Bo-Fu Liu, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho. jcc, 28(2):612-623, 2007. [doi]

Acquisition of rule-based knowledge for analyzing DNA-binding sites in proteinsShinn-Jang Ho, Chia-Yun Chang, Liang-Tsung Huang, Shiow-Fen Hwang, Shinn-Ying Ho. infoscale 2007: 39 [doi]

Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM methodShinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang. biosystems, 90(1):234-241, 2007. [doi]

An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway Identification From Gene Expression ProfilesShinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang. tcbb, 4(4):648-704, 2007. [doi]

Boosting Evolutionary Support Vector Machine for Designing Tumor Classifiers from Microarray DataHui-Ling Huang, Yi-Hsiung Chen, Dwight D. Koeberl, Shinn-Ying Ho. cibcb 2007: 32-38 [doi]

Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiersHui-Ling Huang, Chong-Cheng Lee, Shinn-Ying Ho. biosystems, 90(1):78-86, 2007. [doi]

ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition featuresWen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho. biosystems, 90(2):573-581, 2007. [doi]

iPTREE-STAB: interpretable decision tree based method for predicting protein stability changes upon mutationsLiang-Tsung Huang, M. Michael Gromiha, Shinn-Ying Ho. bioinformatics, 23(10):1292-1293, 2007. [doi]

Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor methodWen-Lin Huang, Hung-Ming Chen, Shiow-Fen Hwang, Shinn-Ying Ho. biosystems, 90(2):405-413, 2007. [doi]

POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical propertiesChun-Wei Tung, Shinn-Ying Ho. bioinformatics, 23(8):942-949, 2007. [doi]

2006

2005

Quality-time analysis of multi-objective evolutionary algorithmsJian-Hung Chen, Shinn-Ying Ho, David E. Goldberg. gecco 2005: 1455-1462 [doi]

Design of nearest neighbor classifiers: multi-objective approachJian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho. ijar, 40(1-2):3-22, 2005. [doi]

∞ optimal controllers using an intelligent genetic algorithm IGAShinn-Jang Ho, Shinn-Ying Ho, Ming-Hao Hung, Li-Sun Shu, Hui-Ling Huang. tcst, 13(6):1119-1124, 2005. [doi]

Evolutionary divide-and-conquer approach to inferring S-system models of genetic networksShinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu, Hui-Ling Huang. cec 2005: 691-698 [doi]

Inference of S-system Models for Large-Scale Genetic NetworksShinn-Ying Ho, Chih-Hung Hsieh, Fu-Chieh Yu. icde 2005: 1155 [doi]

Interpretable Prediction of Protein Stability Changes upon Mutation by Using Decision TreeLarry Huang, Wen-Lin Huang, Shinn-Ying Ho, Shiow-Fen Hwang. cibcb 2005: 521-525

Flexible protein-ligand docking using particle swarm optimizationBo-Fu Liu, Hung-Ming Chen, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho. cec 2005: 251-258 [doi]

MeSwarm: memetic particle swarm optimizationBo-Fu Liu, Hung-Ming Chen, Jian-Hung Chen, Shiow-Fen Hwang, Shinn-Ying Ho. gecco 2005: 267-268 [doi]

2004

Design of Nearest Neighbor Classifiers Using an Intelligent Multi-objective Evolutionary AlgorithmJian-Hung Chen, Hung-Ming Chen, Shinn-Ying Ho. pricai 2004: 262-271 [doi]

OSA: orthogonal simulated annealing algorithm and its application to designing mixed H/sub 2//H/sub /spl infin// optimal controllersShin-Hang Ho, Shinn-Ying Ho, Li-Sun Shu. tsmc, 34(5):588-600, 2004. [doi]

Inheritable genetic algorithm for biobjective 0/1 combinatorial optimization problems and its applicationsShinn-Ying Ho, Jian-Hung Chen, Meng-Hsun Huang. tsmc, 34(1):609-620, 2004. [doi]

Intelligent evolutionary algorithms for large parameter optimization problemsShinn-Ying Ho, Li-Sun Shu, Jian-Hung Chen. tec, 8(6):522-541, 2004. [doi]

An orthogonal simulated annealing algorithm for large floorplanning problemsShinn-Ying Ho, Shinn-Jang Ho, Yi-Kuang Lin, W. C.-C. Chu. tvlsi, 12(8):874-877, 2004. [doi]

Design of accurate classifiers with a compact fuzzy-rule base using an evolutionary scatter partition of feature spaceShinn-Ying Ho, Hung-Ming Chen, Shinn-Jang Ho, Tai-Kang Chen. tsmc, 34(2):1031-1044, 2004. [doi]

A Novel Multi-objective Orthogonal Simulated Annealing Algorithm for Solving Multi-objective Optimization Problems with a Large Number of ParametersLi-Sun Shu, Shinn-Jang Ho, Shinn-Ying Ho, Jian-Hung Chen, Ming-Hao Hung. gecco 2004: 737-747 [doi]

2003

2002

Fitness Inheritance In Multi-objective OptimizationJian-Hung Chen, David E. Goldberg, Shinn-Ying Ho, Kumara Sastry. gecco 2002: 319-326

Design of an optimal nearest neighbor classifier using an intelligent genetic algorithmShinn-Ying Ho, Chia-Cheng Liu, Soundy Liu, Jun-Wen Jou. cec 2002: 594-599 [doi]

Design of high performance fuzzy controllers using flexible parameterized membership functions and intelligent genetic algorithmsShinn-Ying Ho, Tai-Kang Chen, Shinn-Jang Ho. cec 2002: 1378-1383 [doi]

An evolutionary approach for pose determination and interpretation of occluded articulated objectsShinn-Ying Ho, Zhen-Bang Huang, Shinn-Jang Ho. cec 2002: 1092-1097 [doi]

Design of an optimal nearest neighbor classifier using an intelligent genetic algorithmShinn-Ying Ho, Chia-Cheng Liu, Soundy Liu. prl, 23(13):1495-1503, 2002. [doi]

2001

2000

Designing an Efficient Fuzzy classifier Using an Intelligent Genetic AlgorithmShinn-Ying Ho, Tai-Kang Chen, Shinn-Jang Ho. compsac 2000: 293-298 [doi]

A Simple and Fast GA-SA hybrid Image Segmentation AlgorithmShinn-Ying Ho, Kual-Zheng Lee. gecco 2000: 718-725

1998

An analytic solution for the pose determination of human faces from a monocular imageShinn-Ying Ho, Hui-Ling Huang. prl, 19(11):1045-1054, 1998. [doi]

1994

Measuring 3-D location and shape parameters of cylinders by a spatial encoding techniqueZen Chen, Tsorng-Lin Chia, Shinn-Ying Ho. trob, 10(5):632-647, 1994. [doi]

1993

Polyhedral face reconstruction and modeling from a single image with structured lightZen Chen, Shinn-Ying Ho, Din-Chang Tseng. tsmc, 23(3):864-872, 1993. [doi]

Incremental model building of polyhedral objects using structured lightZen Chen, Shinn-Ying Ho. PR, 26(1):33-46, 1993. [doi]

An effective search approach to camera parameter estimation using an arbitrary planar calibration objectZen Chen, Chao-Ming Wang, Shinn-Ying Ho. PR, 26(5):655-666, 1993. [doi]

1991

Computer vision for robust 3D aircraft recognition with fast library searchZen Chen, Shinn-Ying Ho. PR, 24(5):375-390, 1991. [doi]

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