Abstract is missing.
- Computational Dissection of Regulatory Networks Using Diverse High-Throughput DataRon Shamir. 2-3 [doi]
- Whole Genome Sequencing, Comparative Genomics, and Systems BiologyEugene W. Myers. 4 [doi]
- Are We There Yet? Genomic Profiling and Mechanism in Cancer ResearchPaul S. Meltzer, Sean Davis, Kristin Baird, Yidong Chen. 6 [doi]
- Spaghetti Code, Soupy Logic, and the Expression of GenesJim Kent. 7 [doi]
- High Content Cellular Analysis and Their ApplicationsStephen T. C. Wong. 8 [doi]
- Fractal Genomics Modeling: A New Approach to Genomic Analysis and Biomarker DiscoverySandy Shaw, Paul Shapshak. 9-17 [doi]
- From DNA Sequence to Network Behavior: Functional Properties of Genetic Regulatory NetworksHamid Bolouri. 18 [doi]
- Shannon Information in Complete GenomesChang-Heng Chang, Li-Ching Hsieh, Ta-Yuan Chen, Hong-Da Chen, Liaofu Luo, Hoong-Chien Lee. 20-30 [doi]
- Segmental Duplications Containing Tandem Repeated Genes Encoding Putative Deubiquitinating EnzymesHong Liu, Li Li, Asher Zilberstein, Chang S. Hahn. 31-39 [doi]
- Recurrence Time Statistics: Versatile Tools for Genomic DNA Sequence AnalysisYinhe Cao, Wen-wen Tung, Jianbo Gao. 40-51 [doi]
- FastR: Fast Database Search Tool for Non-Coding RNAVineet Bafna, Shaojie Zhang. 52-61 [doi]
- Compressed Pattern Matching in DNA SequencesLei Chen, Shiyong Lu, Jeffrey L. Ram. 62-68 [doi]
- A Self-Tuning Method for One-Chip SNP IdentificationMichael Molla, Jude W. Shavlik, Thomas Albert, Todd Richmond, Steven Smith. 69-79 [doi]
- Space-Conserving Optimal DNA-Protein Alignment Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru. 80-88 [doi]
- Algorithms for Association Study Design Using a Generalized Model of Haplotype ConservationRussell Schwartz. 90-97 [doi]
- Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic TreesUsman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams. 98-109 [doi]
- MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV QuasispeciesPatricia Buendia, Giri Narasimhan. 110-119 [doi]
- Gridding and Compression of Microarray ImagesStefano Lonardi, Yu Luo. 122-130 [doi]
- A Theoretical Analysis of Gene SelectionSach Mukherjee, Stephen J. Roberts. 131-141 [doi]
- Minimum Entropy Clustering and Applications to Gene Expression AnalysisHaifeng Li, Keshu Zhang, Tao Jiang. 142-151 [doi]
- Profile-Based String Kernels for Remote Homology Detection and Motif ExtractionRui Kuang, Eugene Ie, Ke Wang, Kai Wang, Mahira Siddiqi, Yoav Freund, Christina S. Leslie. 152-160 [doi]
- A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression DataRyo Yoshida, Tomoyuki Higuchi, Seiya Imoto. 161-172 [doi]
- MISAE: A New Approach for Regulatory Motif ExtractionZhaohui Sun, Jingyi Yang, Jitender S. Deogun. 173-181 [doi]
- Biclustering in Gene Expression Data by TendencyJinze Liu, Jiong Yang, Wei Wang 0010. 182-193 [doi]
- Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene PredictionKaruturi R. Krishna Murthy, Liu Jian Hua. 194-203 [doi]
- SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing ErrorYonghua Han, Bin Ma, Kaizhong Zhang. 206-215 [doi]
- Estimating and Improving Protein Interaction Error RatesPatrik D haeseleer, George M. Church. 216-223 [doi]
- Automated Protein Classification Using Consensus DecisionTolga Can, Orhan Çamoglu, Ambuj K. Singh, Yuan-Fang Wang. 224-235 [doi]
- Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic ApproachBo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu. 236-244 [doi]
- Multiple RNA Structure AlignmentZhuozhi Wang, Kaizhong Zhang. 246-254 [doi]
- Weighting Features to Recognize 3D Patterns of Electron Density in X-Ray Protein CrystallographyKreshna Gopal, Tod D. Romo, James C. Sacchettini, Thomas R. Ioerger. 255-265 [doi]
- Reasoning about Molecular Similarity and PropertiesRahul Singh. 266-277 [doi]
- High-Throughput 3D Structural Homology Detection via NMR Resonance AssignmentChristopher James Langmead, Bruce Randall Donald. 278-289 [doi]
- Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA StructuresHiroshi Matsui, Kengo Sato, Yasubumi Sakakibara. 290-299 [doi]
- An Algorithm for Detecting Homologues of Known Structured RNAs in GenomesShu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang. 300-310 [doi]
- Inverse Protein Folding in 2D HP Mode (Extended Abstract)Arvind Gupta, Ján Manuch, Ladislav Stacho. 311-318 [doi]
- Analysis of a Systematic Search-Based Algorithm for Determining Protein Backbone Structure from a Minimum Number of Residual Dipolar CouplingsLincong Wang, Bruce Randall Donald. 319-330 [doi]
- Multi-Knockout Genetic Network Analysis: The Rad6 ExampleAlon Kaufman, Martin Kupiec, Eytan Ruppin. 332-340 [doi]
- A Hierarchical Mixture of Markov Models for Finding Biologically Active Metabolic Paths Using Gene Expression and Protein ClassesHiroshi Mamitsuka, Yasushi Okuno. 341-352 [doi]
- Dynamic Algorithm for Inferring Qualitative Models of Gene Regulatory NetworksZheng Yun, Kwoh Chee Keong. 353-362 [doi]
- Mapping of Microbial Pathways through Constrained Mapping of Orthologous GenesVictor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu. 363-370 [doi]
- PoPS: A Computational Tool for Modeling and Predicting Protease SpecificitySarah E. Boyd, Maria J. GarcÃa de la Banda, Robert N. Pike, James C. Whisstock, George B. Rudy. 372-381 [doi]
- Selection of Patient Samples and Genes for Outcome PredictionHuiqing Liu, Jinyan Li, Limsoon Wong. 382-392 [doi]
- Comparison of Two Schemes for Automatic Keyword Extraction from MEDLINE for Functional Gene ClusteringYing Liu, Brian J. Ciliax, Karin Borges, Venu Dasigi, Ashwin Ram, Shamkant B. Navathe, Ray Dingledine. 394-404 [doi]
- Calculation, Visualization, and Manipulation of MASTs (Maximum Agreement Subtrees)Shiming Dong, Eileen Kraemer. 405-414 [doi]
- AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein NamesRaf M. Podowski, John G. Cleary, Nicholas T. Goncharoff, Gregory Amoutzias, William S. Hayes. 415-424 [doi]
- Comparative Analysis of Gene Sets in the Gene Ontology Space under the Multiple Hypothesis Testing FrameworkSheng Zhong, Lu Tian, Cheng Li, Kai-Florian Storch, Wing Hung Wong. 425-435 [doi]
- Gene Ontology Friendly Biclustering of Expression ProfilesJinze Liu, Wei Wang 0010, Jiong Yang. 436-447 [doi]
- High-Throughput Computational and Experimental Biology Strategy in Identifying Tumor Expressing CAMsAnguraj Sadanandam, Michelle L. Varney, Rakesh K. Singh. 450-451 [doi]
- State-Space Model for Gene Regulatory Networks with Time DelaysFang-Xiang Wu, Wen-Jun Zhang, Anthony J. Kusalik. 454-455 [doi]
- Nonlinear Modeling on Protein Kinase C(PKC)-Epsilon Inverse Regulation of Stress Fibers in Oncogenically Transformed CellsYingxin Li, Carol A. Heckman, Julie A. Barnes. 456-457 [doi]
- Analysis of Population Dynamics in Beta-Cell Destruction Lead to Identification of Novel Candidate Genes for Type 1 DiabetesYizhou Xie, Xujing Wang. 458-459 [doi]
- Exploring Genomic Context Patterns for Rhodobacter Sphaeroides in the HERBE Knowledge Discovery EnvironmentHeidi J. Sofia, Abigail L. Corrigan, Kyle R. Klicker, George Chin Jr., Eric G. Stephan. 462-463 [doi]
- RepeatAssembler: A Package for Annotation of Full-Length Repetitive DNA Sequences in Fungal GenomesMark L. Farman, Joshua W. Gilkerson, Jerzy W. Jaromczyk, Chuck Staben. 464-467 [doi]
- Search-Space Reduction of a Non-Redundant Peptide DatabaseIan Shadforth, Daniel Crowther, Conrad Bessant. 470-471 [doi]
- Automated and Rapid Bacterial Identification Using LC-Mass Spectrometry with a Relational Database Management SystemSamir V. Deshpande, Rabih E. Jabbour, Charles Wick, A. Peter Snyder. 472-473 [doi]
- Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis SystemJohn H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang. 474-475 [doi]
- FigSearch: Using Maximum Entropy Classifier to Categorize Biological FiguresFang Liu, Tor-Kristian Jenssen, Vegard Nygaard, John Sack, Eivind Hovig. 476-477 [doi]
- GeneTide: Terra Incognita Discovery Endeavor Mining ESTs and Expression Data to Elucidate Known and De-Novo GeneCards GenesMaxim Shklar, Orit Shmueli, Liora Strichman-Almashanu, Michael Shmoish, Doron Lancet, Marilyn Safran. 478-479 [doi]
- Biclustering Gene-Feature Matrices for Statistically Significant Dense PatternsMehmet Koyutürk, Wojciech Szpankowski, Ananth Grama. 480-484 [doi]
- Recognition of Exon/Intron Boundaries Using Dynamic EnsemblesXuanfu Wu, Zhengxin Chen. 485-486 [doi]
- Probabilistic Consistency Analysis for Gene SelectionSach Mukherjee, Stephen J. Roberts. 487-488 [doi]
- Automating the Biological Data Collection Process with AgentsZoé Lacroix, Kaushal Parekh, Hasan Davulcu, I. V. Ramakrishnan, Nikeeta Julasana. 489-490 [doi]
- An Intelligent Digital Library System for BiologistsJeffrey Stone, Xindong Wu, Marc Greenblatt. 491-492 [doi]
- A New Approach to Clustering Biological Data Using Message PassingHuimin Geng, Dhundy Bastola, Hesham H. Ali. 493-494 [doi]
- Ontology Specific Data Mining Based on Dynamic GrammarsDaniel Quest, Hesham H. Ali. 495-496 [doi]
- Application of Relief-F Feature Filtering Algorithm to Selecting Informative Genes for Cancer Classification Using Microarray DataYuhang Wang, Fillia Makedon. 497-498 [doi]
- Probability Profile Method -- New Approach to Data Analysis in Tandem Mass SpectrometryAndrey Gorin, Robert M. Day, Andrey Borziak, Michael B. Strader, Gregory B. Hurst, Tema Fridman. 499-502 [doi]
- Assigning Gene Ontology Categories (GO) to Yeast Genes Using Text-Based Supervised Learning MethodsTomonori Izumitani, Hirotoshi Taira, Hideto Kazawa, Eisaku Maeda. 503-504 [doi]
- PPM-Chain De novo Peptide Identification Program Comparable in Performance to SequestRobert M. Day, Andrey Borziak, Andrey Gorin. 505-508 [doi]
- Comparative Genomics of Cyclin-Dependent Kinases Suggest Co-Evolution of the RNAP II C-Terminal Domain and CTD-Directed CDKsZhenhua Guo, John W. Stiller. 510-511 [doi]
- Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGATerrence S. T. Mak, K. P. Lam. 512-514 [doi]
- Gene Length and Alternative Transcription in Fruit FlyBoris Budagyan, Ann E. Loraine. 515-516 [doi]
- Protein Classification into Domains of Life Using Markov Chain ModelsFrancisca Zanoguera, Massimo de Francesco. 517-519 [doi]
- EcMLST: An Online Database for Multi Locus Sequence Typing of Pathogenic Escherichia coliWeihong Qi, David W. Lacher, Alyssa C. Bumbaugh, Katie E. Hyma, Lindsey M. Ouellette, Teresa M. Large, Cheryl L. Tarr, Thomas S. Whittam. 520-521 [doi]
- On Complexity Measures for Biological SequencesFei Nan, Donald A. Adjeroh. 522-526 [doi]
- A Markov Model Based Gene Discrimination Approach in TrypanosomesAllison Griggs, Shuba Gopal. 528 [doi]
- Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning AlgorithmsJonathan J. Ward, Jaspreet Singh Sodhi, Bernard F. Buxton, David T. Jones. 529-530 [doi]
- Deriving a Novel Codon Index by Combining Period-3 and Fractal Features of DNA SequencesYan Qi 0003, Jianbo Gao, Yinhe Cao, Wen-wen Tung. 531-532 [doi]
- Exploring the Use of Stem-Loop Characteristics for Pinpointing Structural RNA GenesKirt M. Noël, Kay C. Wiese. 533-534 [doi]
- Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coliRichard F. Meraz, Xiaofeng He, Chris H. Q. Ding, Stephen R. Holbrook. 535-538 [doi]
- Quantitative Analysis of Membrane Protein Localization and SignalingPeter M. Kasson, Johannes B. Huppa, Mark M. Davis, Axel T. Brünger. 540-541 [doi]
- The SSAHA Trace ServerZemin Ning, William Spooner, Adam Spargo, Steven Leonard, Mark Rae, Antony Cox. 544-545 [doi]
- Agent-Oriented Approach to DNA ComputingGrace Steele, Vojislav Stojkovic. 546-551 [doi]
- Accelerating the Kernels of BLAST with an Efficient PIM (Processor-In-Memory) ArchitectureJung-Yup Kang, Sandeep Gupta, Jean-Luc Gaudiot. 552-553 [doi]
- Qvalue Method May Not Always Control False Discovery Rate in Genomics ApplicationsXiao Yang. 556-557 [doi]
- Application of a Genetic Algorithm/K-Nearest Neighbor Method to the Classification of Renal Cell CarcinomaDongqing Liu, Ting Shi, Joseph A. DiDonato, John D. Carpten, Jianping Zhu, Zhong-Hui Duan. 558-559 [doi]
- Mining Estrogen Microarray Data: An Approach Using Contrast Data AnalysisHaili Jiao, Peixin Yang, Zhengxin Chen. 560-561 [doi]
- EGOMinor: A Genomics and Proteomics Data Computation and Interpretation System for Biomedical ApplicationsWeimin Feng, Gaurav Tuteja, May D. Wang. 562-563 [doi]
- A Java Program to Create Simulated Microarray ImagesBill Martin, Robert M. Horton. 564-565 [doi]
- Inferring Genetic Networks from Microarray DataShawn Martin, George Davidson, Elebeoba E. May, Jean-Loup Faulon, Margaret Werner-Washburne. 566-569 [doi]
- Extracting Characteristic Patterns from Genome - Wide Expression Data by Non-Negative Matrix FactorizationNiNi Rao, Simon J. Shepherd. 570-571 [doi]
- Imputation of Missing Values in DNA Microarray Gene Expression DataHyunsoo Kim, Gene H. Golub, Haesun Park. 572-573 [doi]
- Disease Gene Explorer: Display Disease Gene Dependency by Combining Bayesian Networks with ClusteringQian Diao, Wei Hu, Hao Zhong, Juntao Li, Feng Xue, Tao Wang, Yimin Zhang. 574-575 [doi]
- DNA Microarray Image Analysis Using Active Contour ModelYuan-Kai Wang, Cheng-Wei Huang. 576-577 [doi]
- Meanshift Clustering for DNA Microarray AnalysisDanny Barash, Dorin Comaniciu. 578-579 [doi]
- The Dynamic Range of Gene Expressions Depend on Their OntologyYizhou Xie, Soumitra Ghosh, Parthav Jailwalia, Xujing Wang. 580-581 [doi]
- Subspace Clustering for Microarray Data Analysis: Multiple Criteria and Significance AssessmentHui Fang, ChengXiang Zhai, Lei Liu, Jiong Yang. 582-583 [doi]
- Comparative Analysis of Gene Expression and DNA Copy Number Data for Pancreatic and Breast Cancers Using an Orthogonal DecompositionJohn A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra. 584-585 [doi]
- High-Throughput Microarray-Based GenotypingGeoffrey Yang, Ming-Hsiu Ho, Earl Hubbell. 586-587 [doi]
- Computational Methods for Predicting Intramolecular G-Quadruplexes in Nucleotide SequencesLawrence D Antonio, Paramjeet Bagga. 590-591 [doi]
- Gene Recovery of Two Genome-Filtration Sequencing Techniques When Applied to the Maize GenomeXiequn Xu, W. Bradley Barbazuk, Yucheng Feng, Karel Schubert, Agnes P. Chan, Geo Pertea, Li Zheng, Foo Cheung, Yuandan Lee. 594-595 [doi]
- Navigating through the Biological MazeZoé Lacroix, Kaushal Parekh, Louiqa Raschid, Maria-Esther Vidal. 594-595 [doi]
- How Biological Source Capabilities May Affect the Data Collection ProcessZoé Lacroix, Vidyadhari Edupuganti. 596-597 [doi]
- Labeling and Enhancing Life Sciences LinksStephan Heymann, Felix Naumann, Louiqa Raschid, Peter Rieger. 598-599 [doi]
- A New Hierarchical Method for Identification of Dynamic Regulatory Pathways from Time-Series DNA Microarray DataAlireza Darvish, EunSang Bak, Krishna Gopalakrishnan, R. H. Zadeh, Kayvan Najarian. 602-603 [doi]
- Boosted PRIM with Application to Searching for Oncogenic Pathway of Lung CancerPei Wang, Young Kim, Jonathan R. Pollack, Robert Tibshirani. 604-609 [doi]
- A. Genetic Algorithm for Inferring Time Delays in Gene Regulatory NetworksFang-Xiang Wu, Anthony J. Kusalik, Wen-Jun Zhang. 610-611 [doi]
- A Knowledge Base for Computational Pathway ReconstructionPeng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu. 612-613 [doi]
- In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu. 614-615 [doi]
- A Finite Model Theory for Biological HypothesesStephen A. Racunas, Christopher Griffin, Nigam Shah. 616-620 [doi]
- Functional Modules from Protein Networks of Kinome and Cell Cycle in Saccharomyces CerevisiaeHee Young Kang, Hak Yong Kim. 621-622 [doi]
- Bacillus Subtilis Protein Interaction Network AnalysisOlusola C. Idowu, Steven J. Lynden, Malcolm P. Young, Péter András. 623-625 [doi]
- Dynamical Robustness in Gene Regulatory NetworksJean-Loup Faulon, Shawn Martin, Robert D. Carr. 626-627 [doi]
- An Algorithm for Reconstruction of Markov Blankets in Bayesian Networks of Gene Expression DatasetsCatalin C. Barbacioru, Daniel J. Cowden, Joel H. Saltz. 628-629 [doi]
- Synchronized Oscillations and Chaos in Coupled Genetic RepressilatorsJianbo Gao, Jesse S. A. Bridgewater, Vwani P. Roychowdhury. 630-631 [doi]
- Inference of Gene Regulatory Network Based on Module Network Model with Gene Functional ClassificationsKohei Taki, Reiji Teramoto, Yoichi Takenaka, Hideo Matsuda. 632-633 [doi]
- A Graph Analysis Method to Detect Metabolic Sub-Networks Based on Phylogenetic ProfileShoko Miyake, Yoichi Takenaka, Hideo Matsuda. 634-635 [doi]
- Parallel Extreme Pathway Computation for Metabolic NetworksLie-Quan Lee, Jeff Varner, Kwok Ko. 636-639 [doi]
- Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu. 640-641 [doi]
- Pathway Mapping with Operon Information: An Integer-Programming MethodFenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu. 642-643 [doi]
- Analysis of Signaling Pathways in Human T-Cells Using Bayesian Network Modeling of Single Cell DataKaren Sachs, Omar D. Perez, Dana Pe er, Garry P. Nolan, David K. Gifford, Tommi Jaakkola, Douglas A. Lauffenburger. 644 [doi]
- An Bayesian Method for Biological Pathway Discovery from High-Throughput Experimental DataWei Wang, Gregory F. Cooper. 645-646 [doi]
- Applying Two-Level Simulated Annealing on Bayesian Structure Learning to Infer Genetic NetworksTie Wang, Jeffrey W. Touchman, Guoliang Xue. 647-648 [doi]
- A Efficient Algorithm for Unique Signature Discovery on Whole-Genome EST DatabasesHsiao Ping Lee, Tzu-Fang Sheu, Yin-Te Tsai, Ching Hua Shih, Chuan Yi Tang. 650-651 [doi]
- VirusFinder: A Web-Based Virus Identification System Using Viral Nucleotide SignaturesYan Ding, Hong Cao, Shu Wen. 652-653 [doi]
- Finding Cancer Biomarkers from Mass Spectrometry Data by Decision ListsJian Liu, Ming Li. 654-655 [doi]
- Incremental and Decremental Least Squares Support Vector Machine and Its Application to Drug DesignHyunsoo Kim, Haesun Park. 656-657 [doi]
- A Prediction Model for the Drug Efficacy of Interferon in CHC Patients Based on SNPsEugene Lin, Dennis Chen, Yuchi Hwang, Ashely Chang, Z. John Gu. 658-659 [doi]
- RNA Motif Search Using the Structure to String (STR:::2:::) MethodOriel Bergig, Danny Barash, Klara Kedem. 660-661 [doi]
- PRUNER: Algorithms for Finding Monad Patterns in DNA SequencesRavi Vijaya Satya, Amar Mukherjee. 662-665 [doi]
- CUBIC: Search for Binding SitesVictor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu. 666-667 [doi]
- BioSPRINT: Classification of Intron and Exon Sequences Using the SPRINT AlgorithmKevin Crosby, Paula Gabbert. 668-669 [doi]
- A Hidden Markov Model for Gene Function Prediction from Sequential Expression DataXutao Deng, Hesham H. Ali. 670-671 [doi]
- Using Enhancing Signals to Improve Specificity of ab initio Splice Site SensorsAlexandre Tchourbanov, Hesham H. Ali, Jitender S. Deogun. 672-673 [doi]
- SRPVS: A New Motif Searching Algorithm for Protein AnalysisXiaolu Huang, Hesham H. Ali, Anguraj Sadanandam, Rakesh Singh. 674-675 [doi]
- Locating All Tandem Repeat Families in a SequenceDonald A. Adjeroh, Jianan Feng. 676-681 [doi]
- Selection of Putative Cis-Regulatory Motifs through Regional and Global ConservationYoulian Pan, Brandon Smith, Hung Fang, A. Fazel Famili, Marianna Sikorska, P. Roy Walker. 684-685 [doi]
- Promoter Recognition for E. coli DNA Segments by Independent Component AnalysisYasuo Matsuyama, Ryo Kawamura. 686-691 [doi]
- Computational Analysis and Classification of p53 Mutants According to Primary StructureKrishna Gopalakrishnan, R. H. Zadeh, Kayvan Najarian, Alireza Darvish. 694-695 [doi]
- In-Silico Prediction of Surface Residue Clusters for Enzyme-Substrate SpecificityGong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Al Geist, Nagiza F. Samatova. 696-697 [doi]
- Comparing 3D Protein Structures Similarity by Using Fractal FeaturesChenyang Cui, Donghui Wang, Jiaoying Shi. 698-699 [doi]
- Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics SimulationPeng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu. 700-701 [doi]
- Automatic Prediction of Functional Site Regions in Low-Resolution Protein StructuresJaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones. 702-703 [doi]
- BPAP: A Computational Tool for Whole Genome Analysis and AnnotationBarrett Abel, Martin Gollery. 704-705 [doi]
- A New Method of Secondary Structure Assignment Based on the Delaunay Tessellation of Protein StructuresTodd J. Taylor, Iosif I. Vaisman. 706-707 [doi]
- Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation DomainJun-tao Guo, Ying Xu. 708-709 [doi]
- A Novel Computational Framework for Structural Classification of Proteins Using Local Geometric Parameter MatchingSumeet Dua, Naveen Kandiraju. 710-711 [doi]
- Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift PredictionK. Arun, Christopher James Langmead. 712-713 [doi]
- Contraction Graphs for Representation and Analysis of RNA Secondary StructureChris H. Q. Ding, Richard F. Meraz, Xiaofeng He, Stephen R. Holbrook. 716-717 [doi]
- Identifying MicroRNAs in Plant GenomesChristopher Maher, Marja Timmermans, Lincoln Stein, Doreen Ware. 718-723 [doi]
- Fine-Grain Matrix Graph Representation for Predicting Mutations Leading to Conformational Rearrangements in Small RNAsAssaf Avihoo, Nir Dromi, Danny Barash. 724-725 [doi]
- MUSCLE: Multiple Sequence Alignment with Improved Accuracy and SpeedRobert C. Edgar. 728-729 [doi]
- A New Hardware Architecture for Genomic and Proteomic Sequence AlignmentGreg Knowles, Paul Gardner-Stephen. 730-731 [doi]
- DASH: Localising Dynamic Programming for Order of Magnitude Faster, Accurate Sequence AlignmentPaul Gardner-Stephen, Greg Knowles. 732-735 [doi]
- SUPERCONTIGS: A Contig Scaffolding ToolDaniela Puiu. 736-737 [doi]
- Multiple Alignment of Rearranged GenomesAaron E. Darling, Bob Mau, Mark Craven, Nicole T. Perna. 738-739 [doi]
- An Exhaustive Genome Assembly Algorithm Using K-Mers to Indirectly Perform N-Squared Comparisons in O(N)Maulik K. Shah, HoJoon Lee, Stephanie A. Rogers, Jeffrey W. Touchman. 740-741 [doi]
- Association Tests and Estimation of Haplotype Frequencies and of Penetrance-Related Parameters in a Case-Control StudyShiori Furihata, Toshikazu Ito, Naoyuki Kamatani. 744-745 [doi]
- Designing Synthetic Biological Systems by Multiple Time Scale NetworksRuiqi Wang, Junya Nakai, Mitsuyasu Seo, Luonan Chen. 748-749 [doi]