Abstract is missing.
- ECCB/JBI 2005Roderic Guigó, Federico Morán, Alfonso Valencia, Josep F. Abril. 2 [doi]
- ECCB/JBI 2005 Organization5 [doi]
- Augmented cell-graphs for automated cancer diagnosisCigdem Demir, S. Humayun Gultekin, Bülent Yener. 12 [doi]
- A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptorsDavid de Juan, Mario Mellado, José Miguel Rodríguez-Frade, Patricia Hernanz-Falcón, Antonio Serrano, Antonio del Sol, Alfonso Valencia, Carlos Martínez-A, Ana María Rojas. 18 [doi]
- Predicting post-synaptic activity in proteins with data miningGisele L. Pappa, Anthony J. Baines, Alex Alves Freitas. 25 [doi]
- DPDB: a database for the storage, representation and analysis of polymorphism in the ::::Drosophila:::: genusSònia Casillas, Natalia Petit, Antonio Barbadilla. 30 [doi]
- Design of a description language for generating wrapper to collect biological dataMyungeun Lim, Myunggeun Chung, Myungnam Bae, Sunhee Park. 32 [doi]
- A query language for biological networksUlf Leser. 39 [doi]
- Adding Some SPICE to DASAndreas Prlic, Thomas A. Down, Tim J. P. Hubbard. 41 [doi]
- SIMAP - The similarity matrix of proteinsRoland Arnold, Thomas Rattei, Patrick Tischler, Minh-Duc Truong, Volker Stümpflen, Hans-Werner Mewes. 46 [doi]
- ARTS: alignment of RNA tertiary structuresOranit Dror, Ruth Nussinov, Haim J. Wolfson. 53 [doi]
- Predicting protein stability changes from sequences using support vector machinesEmidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio. 58 [doi]
- Fast protein classification with multiple networksKoji Tsuda, Hyunjung Shin, Bernhard Schölkopf. 65 [doi]
- Less is more: towards an optimal universal description of protein foldsJoseph D. Szustakowski, Simon Kasif, Zhiping Weng. 71 [doi]
- Evaluating the usefulness of protein structure models for molecular replacementAlejandro Giorgetti, Domenico Raimondo, Adriana Erica Miele, Anna Tramontano. 76 [doi]
- Non-coding RNAs in ::::Ciona intestinalis::::Kristin Missal, Dominic Rose, Peter F. Stadler. 78 [doi]
- The fragment assembly string graphEugene W. Myers. 85 [doi]
- Finding exact optimal motifs in matrix representation by partitioningHenry C. M. Leung, Francis Y. L. Chin. 92 [doi]
- Prediction of regulatory modules comprising microRNAs and target genesSungroh Yoon, Giovanni De Micheli. 100 [doi]
- Computational discovery of transcriptional regulatory rulesTho Hoan Pham, José Carlos Clemente, Kenji Satou, Tu Bao Ho. 107 [doi]
- Data-adaptive test statistics for microarray dataSach Mukherjee, Stephen J. Roberts, Mark J. van der Laan. 114 [doi]
- Identifying active transcription factors and kinases from expression data using pathway queriesFlorian Sohler, Ralf Zimmer. 122 [doi]
- Analyzing microarray data using quantitative association rulesElisabeth Georgii, Lothar Richter, Ulrich Rückert, Stefan Kramer. 129 [doi]
- A fully Bayesian model to cluster gene-expression profilesC. Vogl, Fatima Sanchez-Cabo, Gernot Stocker, S. Hubbard, Olaf Wolkenhauer, Zlatko Trajanoski. 136 [doi]
- Fusing microarray experiments with multivariate regressionWalter R. Gilks, Brian D. M. Tom, Alvis Brazma. 143 [doi]
- Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotesToni Gabaldón, Martijn A. Huynen. 150 [doi]
- A Gamma mixture model better accounts for among site rate heterogeneityItay Mayrose, Nir Friedman, Tal Pupko. 158 [doi]
- Computing recombination networks from binary sequencesDaniel H. Huson, Tobias H. Klöpper. 165 [doi]
- Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov modelsDirk Husmeier. 172 [doi]
- Recovering haplotype structure through recombination and gene conversionMathieu Lajoie, Nadia El-Mabrouk. 179 [doi]
- Association Cluster Detector: a tool for heuristic detection of significance clusters in whole-genome scansTomàs Marquès-Bonet, Oscar Lao, Robert Goertsches, Manuel Comabella, Xavier Montalban, Arcadi Navarro. 181 [doi]
- Model-P: a basecalling method for resequencing microarrays of diploid samplesYiping Zhan, David Kulp. 189 [doi]
- Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in ::::E.Coli::::E. Simão, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya. 196 [doi]
- Genome-wide decoding of hierarchical modular structure of transcriptional regulation by ::::cis::::-element and expression clusteringDmitriy Leyfer, Zhiping Weng. 203 [doi]
- A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modesJean-Marc Schwartz, Minoru Kanehisa. 205 [doi]
- Estimating gene regulatory networks and protein-protein interactions of ::::Saccharomyces cerevisiae:::: from multiple genome-wide dataNaoki Nariai, Yoshinori Tamada, Seiya Imoto, Satoru Miyano. 212 [doi]
- Knowledge-based framework for hypothesis formation in biochemical networksNam Tran, Chitta Baral, Vinay J. Nagaraj, Lokesh Joshi. 219 [doi]
- Decomposing protein networks into domain-domain interactionsMario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto, Thomas Lengauer. 221 [doi]
- Horizontal gene transfer depends on gene content of the hostCsaba Pál, Balázs Papp, Martin J. Lercher. 223 [doi]
- Growing Bayesian network models of gene networks from seed genesJosé M. Peña, Johan Björkegren, Jesper Tegnér. 229 [doi]
- Reconsidering complete search algorithms for protein backbone NMR assignmentOlga Vitek, Chris Bailey-Kellogg, Bruce Craig, Paul Kuliniewicz, Jan Vitek. 236 [doi]
- RNA secondary structural alignment with conditional random fieldsKengo Sato, Yasubumi Sakakibara. 242 [doi]
- Fast maximum-likelihood refinement of electron microscopy imagesSjors H. W. Scheres, Mikel Valle, José María Carazo. 244 [doi]
- A probabilistic model for mining implicit chemical compound-gene relations from literatureShanfeng Zhu, Yasushi Okuno, Gozoh Tsujimoto, Hiroshi Mamitsuka. 251 [doi]
- Implementing the iHOP concept for navigation of biomedical literatureRobert Hoffmann, Alfonso Valencia. 258 [doi]
- Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contextsRobert Küffner, Katrin Fundel, Ralf Zimmer. 267 [doi]
- Web servicing the biological officeMartin Szugat, Daniel Güttler, Katrin Fundel, Florian Sohler, Ralf Zimmer. 269 [doi]