Abstract is missing.
- ISMB 2001Søren Brunak, Anders Krogh. 1-4
- An efficient algorithm for finding short approximate non-tandem repeatsEzekiel F. Adebiyi, Tao Jiang, Michael Kaufmann. 5-12
- SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide databaseVineet Bafna, Nathan Edwards. 13-21
- Fast optimal leaf ordering for hierarchical clusteringZiv Bar-Joseph, David K. Gifford, Tommi Jaakkola. 22-29
- Separating real motifs from their artifactsMathieu Blanchette, Saurabh Sinha. 30-38
- Probe selection algorithms with applications in the analysis of microbial communitiesJames Borneman, Marek Chrobak, Gianluca Della Vedova, Andres Figueroa, Tao Jiang. 39-48
- Visualizing associations between genome sequences and gene expression data using genome-mean expression profilesDerek Y. Chiang, Patrick O. Brown, Michael B. Eisen. 49-55
- Gene recognition based on DAG shortest pathsJohn S. Chuang, Dan Roth. 56-64
- Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequencesEleazar Eskin, William Noble Grundy, Yoram Singer. 65-73
- GENIES: a natural-language processing system for the extraction of molecular pathways from journal articlesCarol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky. 74-82
- An insight into domain combinationsGordana Apic, Julian Gough, Sarah A. Teichmann. 83-89
- Promoter prediction in the human genomeSridhar Hannenhalli, Samuel Levy. 90-96
- Disambiguating proteins, genes, and RNA in text: a machine learning approachVasileios Hatzivassiloglou, Pablo Ariel Duboué, Andrey Rzhetsky. 97-106
- Identifying splits with clear separation: a new class discovery method for gene expression dataAnja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron. 107-114
- GEST: a gene expression search tool based on a novel Bayesian similarity metricLawrence Hunter, Ronald C. Taylor, Sonia M. Leach, Richard Simon. 115-122
- Probabilistic divergence measures for detecting interspecies recombinationDirk Husmeier, Frank Wright. 123-131
- Design of a compartmentalized shotgun assembler for the human genomeDaniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers. 132-139
- Integrating genomic homology into gene structure predictionIan Korf, Paul Flicek, Daniel Duan, Michael R. Brent. 140-148
- Generating protein interaction maps from incomplete data: application to fold assignmentMichael Lappe, Jong Park, Oliver Niggemann, Liisa Holm. 149-156
- Feature selection for DNA methylation based cancer classificationFabian Model, Péter Adorján, Alexander Olek, Christian Piepenbrock. 157-164
- New approaches for reconstructing phylogenies from gene order dataBernard M. E. Moret, Li-San Wang, Tandy Warnow, Stacia K. Wyman. 165-173
- Prediction of the coupling specificity of G protein coupled receptors to their G proteinsSteffen Möller, Jaak Vilo, Michael D. R. Croning. 174-181
- Non-symmetric score matrices and the detection of homologous transmembrane proteinsTobias Müller, Sven Rahmann, Marc Rehmsmeier. 182-189
- Designing fast converging phylogenetic methodsLuay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow. 190-198
- Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognitionUwe Ohler, Heinrich Niemann, Guo-chun Liao, Gerald M. Rubin. 199-206
- An algorithm for finding signals of unknown length in DNA sequencesGiulio Pavesi, Giancarlo Mauri, Graziano Pesole. 207-214
- Inferring subnetworks from perturbed expression profilesDana Pe er, Aviv Regev, Gal Elidan, Nir Friedman. 215-224
- Fragment assembly with double-barreled dataPavel A. Pevzner, Haixu Tang. 225-233
- Improved prediction of the number of residue contacts in proteins by recurrent neural networksGianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio. 234-242
- Rich probabilistic models for gene expressionEran Segal, Benjamin Taskar, Audrey Gasch, Nir Friedman, Daphne Koller. 243-252
- Designing better phagesSteven Skiena. 253-261
- Probabilistic approaches to the use of higher order clone relationships in physical map assemblyDavid J. States, Volker Nowotny, Thomas W. Blackwell. 262-269
- Computational expansion of genetic networksAmos Tanay, Ron Shamir. 270-278
- Separation of samples into their constituents using gene expression dataD. Venet, F. Pecasse, C. Maenhaut, Hugues Bersini. 279-287
- 0j.py: a software tool for low complexity proteins and protein domainsMichael J. Wise. 288-295
- Protein-protein interaction map inference using interacting domain profile pairsJérôme Wojcik, Vincent Schächter. 296-305
- CLIFF: clustering of high-dimensional microarray data via iterative feature filtering using normalized cutsEric P. Xing, Richard M. Karp. 306-315
- Molecular classification of multiple tumor typesChen-Hsiang Yeang, Sridhar Ramaswamy, Pablo Tamayo, Sayan Mukherjee, Ryan M. Rifkin, Michael Angelo, Michael Reich, Eric S. Lander, Jill P. Mesirov, Todd R. Golub. 316-322
- Centralization: a new method for the normalization of gene expression dataAlexander Zien, Thomas Aigner, Ralf Zimmer, Thomas Lengauer. 323-331