Alberto D. Pascual-Montano - researchr alias

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Viewing Publication 1 - 40 from 40

2015

2013

3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopyRubén Nogales-Cadenas, Slavica Jonic, F. Tama, A. A. Arteni, Daniel Tabas-Madrid, Miguel Vázquez, Alberto D. Pascual-Montano, Carlos Oscar Sánchez Sorzano. nar, 41(Webserver-Issue):363-367, 2013. [doi]

2012

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomicsDaniel Tabas-Madrid, Rubén Nogales-Cadenas, Alberto D. Pascual-Montano. nar, 40(Web-Server-Issue):478-483, 2012. [doi]

2011

Finding closed frequent item sets by intersecting transactionsChristian Borgelt, Xiaoyuan Yang, Rubén Nogales-Cadenas, Pedro Carmona-Saez, Alberto D. Pascual-Montano. edbt 2011: 367-376 [doi]

Parallelism on the Nonnegative Matrix FactorizationEdgardo Mejía-Roa, Carlos García, José Ignacio Gómez, Manuel Prieto, Christian Tenllado, Alberto D. Pascual-Montano, Francisco Tirado. parco 2012: 421-428 [doi]

Biclustering and classification analysis in gene expression using Nonnegative Matrix Factorization on multi-GPU systemsEdgardo Mejía-Roa, Carlos García, José Ignacio Gómez, Manuel Prieto, Francisco Tirado, Rubén Nogales, Alberto D. Pascual-Montano. isda 2011: 882-887 [doi]

Gene expression modular analysis: an overview from the data mining perspectiveAlberto D. Pascual-Montano. widm, 1(5):381-396, 2011. [doi]

2010

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profilingIgnacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García, Martina Marbà, David Montaner, Joaquín Dopazo. nar, 38(Web-Server-Issue):210-213, 2010. [doi]

Moara: a Java library for extracting and normalizing gene and protein mentionsMariana L. Neves, José María Carazo, Alberto D. Pascual-Montano. bmcbi, 11:157, 2010. [doi]

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signaturesMiguel Vázquez, Rubén Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, José María Carazo, Francisco Tirado, Alberto D. Pascual-Montano, Pedro Carmona-Saez. nar, 38(Web-Server-Issue):228-232, 2010. [doi]

2009

Extraction of biomedical events using case-based reasoningMariana L. Neves, José María Carazo, Alberto D. Pascual-Montano. bionlp 2009: 68-76 [doi]

CentrosomeDB: a human centrosomal proteins databaseRubÃ©n Nogales-Cadenas, Federico Abascal, Javier DÃez-PÃ©rez, JosÃ© MarÃa Carazo, Alberto D. Pascual-Montano. nar, 37(Database-Issue):175-180, 2009. [doi]

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological informationRubÃ©n Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vazquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, JosÃ© MarÃa Carazo, Alberto D. Pascual-Montano. nar, 37(Web-Server-Issue):317-322, 2009. [doi]

SENT: semantic features in textMiguel Vazquez, Pedro Carmona-Saez, RubÃ©n Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, JosÃ© MarÃa Carazo, Alberto D. Pascual-Montano. nar, 37(Web-Server-Issue):153-159, 2009. [doi]

2008

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip dataFederico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano. bioinformatics, 24(9):1208-1209, 2008. [doi]

Assessment of protein set coherence using functional annotationsMonica Chagoyen, José María Carazo, Alberto D. Pascual-Montano. bmcbi, 9, 2008. [doi]

bioNMF: a web-based tool for nonnegative matrix factorization in biologyE. MejÃa-Roa, Pedro Carmona-Saez, R. Nogales, Cesar Vicente, M. VÃ¡zquez, X. Y. Yang, Carlos GarcÃa, Francisco Tirado, Alberto D. Pascual-Montano. nar, 36(Web-Server-Issue):523-528, 2008. [doi]

CBR-Tagger: a case-based reasoning approach to the gene/protein mention problemMariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano. bionlp 2008: 108-109 [doi]

Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java LibraryMariana L. Neves, José María Carazo, Alberto D. Pascual-Montano. ismb 2010: 71-80 [doi]

Non-negative matrix factorization in bioinformatics: Towards understanding biological processesAlberto D. Pascual-Montano. iscas 2008: 1332-1335 [doi]

Named Entity Recognition and Normalization: A Domain-Specific Language ApproachMiguel Vazquez, Monica Chagoyen, Alberto D. Pascual-Montano. iwpacbb 2009: 147-155 [doi]

2006

Integrated analysis of gene expression by association rules discoveryPedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano. bmcbi, 7:54, 2006. [doi]

Biclustering of gene expression data by non-smooth non-negative matrix factorizationPedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano. bmcbi, 7:78, 2006. [doi]

A literature-based similarity metric for biological processesMonica Chagoyen, Pedro Carmona-Saez, Concha Gil, JosÃ© MarÃa Carazo, Alberto D. Pascual-Montano. bmcbi, 7:363, 2006. [doi]

Discovering semantic features in the literature: a foundation for building functional associationsMonica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano. bmcbi, 7:41, 2006. [doi]

bioNMF: a versatile tool for non-negative matrix factorization in biologyAlberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, JosÃ© MarÃa Carazo, Roberto D. Pascual-Marqui. bmcbi, 7:366, 2006. [doi]

Nonsmooth Nonnegative Matrix Factorization (nsNMF)Alberto D. Pascual-Montano, José María Carazo, Kieko Kochi, Dietrich Lehmann, Roberto D. Pascual-Marqui. pami, 28(3):403-415, 2006. [doi]

Optimization problems in electron microscopy of single particlesCarlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo. anor, 148(1):133-165, 2006. [doi]

2005

A Speculative Parallel Algorithm for Self-Organizing MapsCarlos García, Manuel Prieto, Alberto D. Pascual-Montano. parco 2005: 615-622

Two-way clustering of gene expression profiles by sparse matrix factorizationAlberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui. csb 2005: 103-104 [doi]

2003

Engene: the processing and exploratory analysis of gene expression dataJorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano. bioinformatics, 19(5):657-658, 2003.

2002

Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object DatabasesPedro A. de Alarcón, Alberto D. Pascual-Montano, José María Carazo. civr 2002: 225-234 [doi]

Modeling Shape and Topology of 3D Images of Biological SpecimensPedro A. de Alarcón, Alberto D. Pascual-Montano, Amarnath Gupta, José María Carazo. icpr 2002: 79-82 [doi]

2001

Smoothly distributed fuzzy c-means: a new self-organizing mapRoberto D. Pascual-Marqui, Alberto D. Pascual-Montano, Kieko Kochi, José María Carazo. PR, 34(12):2395-2402, 2001. [doi]

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