Alida Palmisano - researchr alias

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Viewing Publication 1 - 12 from 12

2022

TPWshiny: an interactive R/Shiny app to explore cell line transcriptional responses to anti-cancer drugsPeter Zhang, Alida Palmisano, Ravindra Kumar, Ming-Chung Li, James H. Doroshow, Yingdong Zhao. bioinformatics, 38(2):570-572, 2022. [doi]

2018

JigCell Model Connector: building large molecular network models from componentsThomas C. Jones Jr, Stefan Hoops, Layne T. Watson, Alida Palmisano, John J. Tyson, Clifford A. Shaffer. simulation, 94(11), 2018. [doi]

2017

OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trialsAlida Palmisano, Yingdong Zhao, Ming-Chung Li, Eric C. Polley, Richard M. Simon. bib, 18(5):723-734, 2017. [doi]

2015

JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizationsAlida Palmisano, Stefan Hoops, Layne T. Watson, Thomas C. Jones Jr, John J. Tyson, Clifford A. Shaffer. bmcsb, 9:95, 2015. [doi]

2014

Multistate Model Builder (MSMB): a flexible editor for compact biochemical modelsAlida Palmisano, Stefan Hoops, Layne T. Watson, Thomas C. Jones Jr, John J. Tyson, Clifford A. Shaffer. bmcsb, 8:42, 2014. [doi]

2010

Coding Biological Systems in a Stochastic Framework - The Case Study of Budding Yeast Cell CycleAlida Palmisano. biostec 2010: 153-159

Modelling and Inference Strategies for Biological SystemsAlida Palmisano. PhD thesis, University of Trento, Italy, 2010. [doi]

2009

Studying Irreversible Transitions in a Model of Cell Cycle RegulationPaolo Ballarini, Tommaso Mazza, Alida Palmisano, Attila Csikasz-Nagy. ENTCS, 232:39-53, 2009. [doi]

Analyzing various models of Circadian Clock and Cell Cycle couplingAttila Csikász-Nagy, Adrien Fauré, Roberto Larcher, Paola Lecca, Ivan Mura, Ferenc Jordán, Alida Palmisano, Alessandro Romanel, Sean Sedwards, Heike Siebert, Sylvain Soliman, Denis Thieffry, Judit Zámborszky, Tommaso Mazza, Paolo Ballarini. Dagstuhl 2009: [doi]

On the Parameter Inference in Chaotic Chemical SystemsPaola Lecca, Alida Palmisano. ems 2009: 175-180 [doi]

Deducing Chemical Reaction Rate Constants and Their Regions of Confidence from Noisy Measurements of Time Series of ConcentrationPaola Lecca, Alida Palmisano, Corrado Priami. uksim 2009: 200-205 [doi]

From ODES to Language-Based, Executable Models of Biological SystemsAlida Palmisano, I. Mura, Corrado Priami. psb 2009: 239-250 [doi]

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