Arul M. Chinnaiyan - researchr alias

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Viewing Publication 1 - 14 from 14

2018

MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactionsAlexander Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune R. Ramnarine, Rohit Malik, Felix Feng, Arul M. Chinnaiyan, Colin Collins, Süleyman Cenk Sahinalp, Rolf Backofen. bioinformatics, 34(18):3101-3110, 2018. [doi]

2017

2016

Two-pass alignment improves novel splice junction quantificationBrendan A. Veeneman, Sudhanshu Shukla, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Alexey I. Nesvizhskii. bioinformatics, 32(1):43-49, 2016. [doi]

2015

rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq dataYang Shi, Arul M. Chinnaiyan, Hui Jiang. bioinformatics, 31(13):2222-2224, 2015. [doi]

2012

Gene Fusion Markup Language: a prototype for exchanging gene fusion dataShanker Kalyana-Sundaram, Achiraman Shanmugam, Arul M. Chinnaiyan. bmcbi, 13:269, 2012. [doi]

Oculus: faster sequence alignment by streaming read compressionBrendan A. Veeneman, Matthew K. Iyer, Arul M. Chinnaiyan. bmcbi, 13:297, 2012. [doi]

2011

ChimeraScan: a tool for identifying chimeric transcription in sequencing dataMatthew K. Iyer, Arul M. Chinnaiyan, Christopher A. Maher. bioinformatics, 27(20):2903-2904, 2011. [doi]

2010

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq dataZhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan. bmcbi, 11:369, 2010. [doi]

2009

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatchesYou Jung Kim, Nikhil Teletia, Victor Ruotti, Christopher A. Maher, Arul M. Chinnaiyan, Ron Stewart, James A. Thomson, Jignesh M. Patel. bioinformatics, 25(11):1424-1425, 2009. [doi]

2007

A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray ExperimentsHyungwon Choi, Ronglai Shen, Arul M. Chinnaiyan, Debashis Ghosh. bmcbi, 8, 2007. [doi]

From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer ResearchJomol P. Mathew, Barry S. Taylor, Gary D. Bader, Saiju Pyarajan, Marco Antoniotti, Arul M. Chinnaiyan, Chris Sander, Steven J. Burakoff, Bud Mishra. ploscb, 3(2), 2007. [doi]

2006

Eigengene-based linear discriminant model for tumor classification using gene expression microarray dataRonglai Shen, Debashis Ghosh, Arul M. Chinnaiyan, Zhaoling Meng. bioinformatics, 22(21):2635-2642, 2006. [doi]

2005

Internet-based profiler system as integrative framework to support translational researchRobert Kim, Francesca Demichelis, Jeffery Tang, Alberto Riva, Ronglai Shen, Doug F. Gibbs, Vasudeva Mahavishno, Arul M. Chinnaiyan, Mark A. Rubin. bmcbi, 6:304, 2005. [doi]

2002

Mixture modelling of gene expression data from microarray experimentsDebashis Ghosh, Arul M. Chinnaiyan. bioinformatics, 18(2):275-286, 2002.

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