Arun K. Ramani - researchr alias

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Viewing Publication 1 - 7 from 7

2023

Evaluation of single-cell RNAseq labelling algorithms using cancer datasetsErik Christensen, Ping Luo, Andrei L. Turinsky, Mia Husic, Alaina Mahalanabis, Alaine Naidas, Juan Javier Díaz-Mejía, Michael Brudno, Trevor J. Pugh, Arun K. Ramani, Parisa Shooshtari. bib, 24(1), January 2023. [doi]

RNAget: an API to securely retrieve RNA quantificationsSean Upchurch, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu. bioinformatics, 39(4), April 2023. [doi]

2021

MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidatesMichael Apostolides, Yue Jiang, Mia Husic, Robert Siddaway, Cynthia Hawkins, Andrei L. Turinsky, Michael Brudno, Arun K. Ramani. bioinformatics, 37(19):3144-3151, 2021. [doi]

2020

2006

Integrating Co-occurrence Statistics with Information Extraction for Robust Retrieval of Protein Interactions from MedlineRazvan C. Bunescu, Raymond J. Mooney, Arun K. Ramani, Edward M. Marcotte. bionlp 2006: 49-56 [doi]

2005

Comparative experiments on learning information extractors for proteins and their interactionsRazvan C. Bunescu, Ruifang Ge, Rohit J. Kate, Edward M. Marcotte, Raymond J. Mooney, Arun K. Ramani, Yuk Wah Wong. artmed, 33(2):139-155, 2005. [doi]

Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein InteractionsArun K. Ramani, Razvan C. Bunescu, Raymond J. Mooney, Edward M. Marcotte. ismb 2005: 46-53 [doi]

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