Bärbel Finkenstädt - researchr alias

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Viewing Publication 1 - 11 from 11

2021

A spatio-temporal model to reveal oscillator phenotypes in molecular clocks: Parameter estimation elucidates circadian gene transcription dynamics in single-cellsMåns Unosson, Marco Brancaccio, Michael Hastings, Adam M. Johansen, Bärbel Finkenstädt. ploscb, 17(12), 2021. [doi]

2019

Filtering and inference for stochastic oscillators with distributed delaysSilvia Calderazzo, Marco Brancaccio, Bärbel Finkenstädt. bioinformatics, 35(8):1380-1387, 2019. [doi]

2018

Bayesian inference on stochastic gene transcription from flow cytometry dataSimone Tiberi, Mark Walsh, Massimo Cavallaro, Daniel Hebenstreit, Bärbel Finkenstädt. bioinformatics, 34(17), 2018. [doi]

2017

ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression dataGiorgos Minas, Hiroshi Momiji, Dafyd J. Jenkins, Maria J. Costa, David A. Rand, Bärbel Finkenstädt. bmcbi, 18(1):316, 2017. [doi]

Inferring transcriptional logic from multiple dynamic experimentsGiorgos Minas, Dafyd J. Jenkins, David A. Rand, Bärbel Finkenstädt. bioinformatics, 33(21):3437-3444, 2017. [doi]

2013

A temporal switch model for estimating transcriptional activity in gene expressionDafyd J. Jenkins, Bärbel Finkenstädt, David A. Rand. bioinformatics, 29(9):1158-1165, 2013. [doi]

A hierarchical model of transcriptional dynamics allows robust estimation of transcription rates in populations of single cells with variable gene copy numberDan J. Woodcock, Keith W. Vance, Michal Komorowski, Georgy Koentges, Bärbel Finkenstädt, David A. Rand. bioinformatics, 29(12):1519-1525, 2013. [doi]

2009

Bayesian inference of biochemical kinetic parameters using the linear noise approximationMichal Komorowski, Bärbel Finkenstädt, Claire V. Harper, David A. Rand. bmcbi, 10:343, 2009. [doi]

2008

Reconstruction of transcriptional dynamics from gene reporter data using differential equationsBärbel Finkenstädt, Elizabeth A. Heron, Michal Komorowski, Kieron D. Edwards, Sanyi Tang, Claire V. Harper, Julian R. E. Davis, Michael R. H. White, Andrew J. Millar, David A. Rand. bioinformatics, 24(24):2901-2907, 2008. [doi]

2007

Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case studyElizabeth A. Heron, Bärbel Finkenstädt, David A. Rand. bioinformatics, 23(19):2596-2603, 2007. [doi]

1992

Chaotic dynamics in agricultural marketsBärbel Finkenstädt, Peter Kuhbier. anor, 37:73-96, 1992. [doi]

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