Evgenia V. Kriventseva - researchr alias

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Viewing Publication 1 - 20 from 20

2023

OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversityDmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Mathieu Seppey, Matthew Berkeley, Evgenia V. Kriventseva, Evgeny M. Zdobnov. nar, 51(D1):445-451, January 2023. [doi]

2021

OrthoDB in 2020: evolutionary and functional annotations of orthologsEvgeny M. Zdobnov, Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Matthew Berkeley, Evgenia V. Kriventseva. nar, 49(Database-Issue), 2021. [doi]

2019

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologsEvgenia V. Kriventseva, Dmitry Kuznetsov, Fredrik Tegenfeldt, Mosè Manni, Renata Dias, Felipe A. Simão, Evgeny M. Zdobnov. nar, 47(Database-Issue), 2019. [doi]

2017

OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologsEvgeny M. Zdobnov, Fredrik Tegenfeldt, Dmitry Kuznetsov, Robert M. Waterhouse, Felipe A. Simão, Panagiotis Ioannidis, Mathieu Seppey, Alexis Loetscher, Evgenia V. Kriventseva. nar, 45(Database-Issue), 2017. [doi]

2015

OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free softwareEvgenia V. Kriventseva, Fredrik Tegenfeldt, Tom J. Petty, Robert M. Waterhouse, Felipe A. Simão, Igor A. Pozdnyakov, Panagiotis Ioannidis, Evgeny M. Zdobnov. nar, 43(Database-Issue):250-256, 2015. [doi]

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologsFelipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis, Evgenia V. Kriventseva, Evgeny M. Zdobnov. bioinformatics, 31(19):3210-3212, 2015. [doi]

2013

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologsRobert M. Waterhouse, Fredrik Tegenfeldt, Jia Li, Evgeny M. Zdobnov, Evgenia V. Kriventseva. nar, 41(Database-Issue):358-365, 2013. [doi]

2011

OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011Robert M. Waterhouse, Evgeny M. Zdobnov, Fredrik Tegenfeldt, Jia Li, Evgenia V. Kriventseva. nar, 39(Database-Issue):283-288, 2011. [doi]

2009

miROrtho: computational survey of microRNA genesDaniel Gerlach, Evgenia V. Kriventseva, Nazim Rahman, Charles E. Vejnar, Evgeni M. Zdobnov. nar, 37(Database-Issue):111-117, 2009. [doi]

2008

OrthoDB: the hierarchical catalog of eukaryotic orthologsEvgenia V. Kriventseva, Nazim Rahman, Octavio Espinosa, Evgeni M. Zdobnov. nar, 36(Database-Issue):271-275, 2008. [doi]

2003

Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clustersEvgenia V. Kriventseva, Florence Servant, Rolf Apweiler. nar, 31(1):388-389, 2003.

The Proteome Analysis database: a tool for the in silico analysis of whole proteomesManuela Pruess, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler. nar, 31(1):414-417, 2003.

2002

Automation of Protein Sequence Characterization and Its Application in Whole Proteome AnalysisRolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Evgenia V. Kriventseva, Nicola J. Mulder. Dagstuhl 2002: 19-47

Applications of InterPro in Protein Annotation and Genome AnalysisMargaret Biswas, Joseph F. O Rourke, Evelyn Camon, Gillian Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler. bib, 3(3):285-295, 2002.

Theoretical analysis of alternative splice forms using computational methodsStéphanie Boué, Martin Vingron, Evgenia V. Kriventseva, Ina Koch. eccb 2002: 65-73

Interactive InterPro-based comparisons of proteins in whole genomesAlexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov. bioinformatics, 18(2):374-375, 2002.

2001

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomesRolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Evgeni M. Zdobnov. nar, 29(1):44-48, 2001.

CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteinsEvgenia V. Kriventseva, Wolfgang Fleischmann, Evgeni M. Zdobnov, Rolf Apweiler. nar, 29(1):33-36, 2001.

2000

Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole GenomesMargaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov. gcb 2000: 149-158

A collection of well characterised integral membrane proteinsSteffen Möller, Evgenia V. Kriventseva, Rolf Apweiler. bioinformatics, 16(12):1159-1160, 2000.

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