Ilpo Vattulainen - researchr alias

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Viewing Publication 1 - 13 from 13

2023

Unbreaking Assemblies in Molecular Simulations with Periodic BoundariesBart M. H. Bruininks, Tsjerk A. Wassenaar, Ilpo Vattulainen. jcisd, 63(11):3448-3452, June 2023. [doi]

2019

Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regionsMatti Javanainen, Giray Enkavi, Ramon Guixà-González, Waldemar Kulig, Hector Martinez-Seara, Ilya Levental, Ilpo Vattulainen. ploscb, 15(5), 2019. [doi]

2018

Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modelingTatu Pantsar, Sami Rissanen, Daniel Dauch, Tuomo Laitinen, Ilpo Vattulainen, Antti Poso. ploscb, 14(9), 2018. [doi]

2017

2014

How Anacetrapib Inhibits the Activity of the Cholesteryl Ester Transfer Protein? Perspective through Atomistic SimulationsTarja Äijänen, Artturi Koivuniemi, Matti Javanainen, Sami Rissanen, Tomasz Róg, Ilpo Vattulainen. ploscb, 10(11), 2014. [doi]

2012

Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained SimulationsArtturi Koivuniemi, Timo Vuorela, Petri T. Kovanen, Ilpo Vattulainen, Marja T. Hyvönen. ploscb, 8(1), 2012. [doi]

2010

Role of Lipids in Spheroidal High Density LipoproteinsTimo Vuorela, Andrea Catte, Perttu S. Niemelä, Anette Hall, Marja T. Hyvönen, Siewert J. Marrink, Mikko Karttunen, Ilpo Vattulainen. ploscb, 6(10), 2010. [doi]

2009

Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion ChannelPär Bjelkmar, Perttu S. Niemelä, Ilpo Vattulainen, Erik Lindahl. ploscb, 5(2), 2009. [doi]

2007

Assessing the Nature of Lipid Raft MembranesPerttu S. Niemelä, Samuli Ollila, Marja T. Hyvönen, Mikko Karttunen, Ilpo Vattulainen. ploscb, 3(2), 2007. [doi]

Long-range interactions and parallel scalability in molecular simulationsMichael Patra, Marja T. HyvÃ¶nen, Emma Falck, Mohsen Sabouri-Ghomi, Ilpo Vattulainen, Mikko Karttunen. cphysics, 176(1):14-22, 2007. [doi]

2004

Modeling Lipid-Sterol Bilayers: Applications to Structural Evolution, Lateral Diffusion, and RaftsMartin J. Zuckermann, John H. Ipsen, Ling Miao, Ole G. Mouritsen, Morten Nielsen, James Polson, Jenifer Thewalt, Ilpo Vattulainen, Hong Zhu. In Ludwig Brand, Michael L. Johnson, editors, Numerical Computer Methods, Part D. Methods in Enzymology, pages 198-229, Elsevier, 2004. [doi]

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