Jiye Shi - researchr alias

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Viewing Publication 1 - 24 from 24

2022

Mechano-fluorescence actuation in single synaptic vesicles with a DNA framework nanomachineJiangbo Liu, Xinxin Jing, Mengmeng Liu, Fan Li, Min Li, Qian Li, Jiye Shi, Jiang Li, Lihua Wang, Xiuhai Mao, Xiaolei Zuo, Chunhai Fan. scirobotics, 7(73), 2022. [doi]

2021

2020

Thera-SAbDab: the Therapeutic Structural Antibody DatabaseMatthew I. J. Raybould, Claire Marks, Alan P. Lewis, Jiye Shi, Alexander Bujotzek, Bruck Taddese, Charlotte M. Deane. nar, 48(Database-Issue), 2020. [doi]

TCRBuilder: multi-state T-cell receptor structure predictionWing Ki Wong, Claire Marks, Jinwoo Leem, Alan P. Lewis, Jiye Shi, Charlotte M. Deane. bioinformatics, 36(11):3580-3581, 2020. [doi]

2019

D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket DynamicsZhaoqiang Chen, XinBen Zhang, Cheng Peng, Jinan Wang, Zhijian Xu, Kaixian Chen, Jiye Shi, Weiliang Zhu. jcisd, 59(8):3353-3358, 2019. [doi]

Underestimated Noncovalent Interactions in Protein Data BankZhijian Xu, Qian Zhang 0003, Jiye Shi, Weiliang Zhu. jcisd, 59(8):3389-3399, 2019. [doi]

2018

Sequential search leads to faster, more efficient fragment-based de novo protein structure predictionSaulo Henrique Pires de Oliveira, Eleanor C. Law, Jiye Shi, Charlotte M. Deane. bioinformatics, 34(7):1132-1140, 2018. [doi]

Predicting loop conformational ensemblesClaire Marks, Jiye Shi, Charlotte M. Deane. bioinformatics, 34(6):949-956, 2018. [doi]

2017

2015

The Cloudlet Accelerator: Bringing Mobile-Cloud Face Recognition into Real-TimeNathaniel Powers, Alexander Alling, Kiara Osolinsky, Tolga Soyata, Meng Zhu, Haoliang Wang, He Ba, Wendi B. Heinzelman, Jiye Shi, Minseok Kwon. globecom 2015: 1-7 [doi]

2014

Examining Variable Domain Orientations in Antigen Receptors Gives Insight into TCR-Like Antibody DesignJames Dunbar, Bernhard Knapp, Angelika Fuchs, Jiye Shi, Charlotte M. Deane. ploscb, 10(9), 2014. [doi]

SAbDab: the structural antibody databaseJames Dunbar, Konrad Krawczyk, Jinwoo Leem, Terry Baker, Angelika Fuchs, Guy Georges, Jiye Shi, Charlotte M. Deane. nar, 42(Database-Issue):1140-1146, 2014. [doi]

Improving B-cell epitope prediction and its application to global antibody-antigen dockingKonrad Krawczyk, Xiaofeng Liu, Terry Baker, Jiye Shi, Charlotte M. Deane. bioinformatics, 30(16):2288-2294, 2014. [doi]

Use of Network Latency Profiling and Redundancy for Cloud Server SelectionMinseok Kwon, Zuochao Dou, Wendi Heinzelman, Tolga Soyata, He Ba, Jiye Shi. IEEEcloud 2014: 826-832 [doi]

Crowdsourcing Yields a New Standard for Kinks in Protein HelicesHenry R. Wilman, Jean-Paul Ebejer, Jiye Shi, Charlotte M. Deane, Bernhard Knapp. jcisd, 54(9):2585-2593, 2014. [doi]

2013

Mobile computing - A green computing resourceHe Ba, Wendi Rabiner Heinzelman, Charles-Antoine Janssen, Jiye Shi. wcnc 2013: 4451-4456 [doi]

Memoir: template-based structure prediction for membrane proteinsJean-Paul Ebejer, Jamie R. Hill, Sebastian Kelm, Jiye Shi, Charlotte M. Deane. nar, 41(Webserver-Issue):379-383, 2013. [doi]

2011

Environment specific substitution tables improve membrane protein alignmentJamie R. Hill, Sebastian Kelm, Jiye Shi, Charlotte M. Deane. bioinformatics, 27(13):15-23, 2011. [doi]

2010

MEDELLER: homology-based coordinate generation for membrane proteinsSebastian Kelm, Jiye Shi, Charlotte M. Deane. bioinformatics, 26(22):2833-2840, 2010. [doi]

2009

iMembrane: homology-based membrane-insertion of proteinsSebastian Kelm, Jiye Shi, Charlotte M. Deane. bioinformatics, 25(8):1086-1088, 2009. [doi]

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