Junmei Wang - researchr alias

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Viewing Publication 1 - 77 from 77

2023

Model Checking of Possibilistic Linear-Time Properties Based on Generalized Possibilistic Decision ProcessesYongming Li 0001, Wuniu Liu, Junmei Wang, Xianfeng Yu, Chao Li. tfs, 31(10):3495-3506, October 2023. [doi]

Distribution of Bound Conformations in Conformational Ensembles for X-ray Ligands Predicted by the ANI-2X Machine Learning PotentialFengyang Han, Dongxiao Hao, Xibing He, Luxuan Wang, Taoyu Niu, Junmei Wang. jcisd, 63(21):6608-6618, November 2023. [doi]

Unpolarized laser method for infrared spectrum calculation of amide I C=O bonds in proteins using molecular dynamics simulationViet Hoang Man, Xibing He, Phuong H. Nguyen, Celeste Sagui, Christopher Roland, Xiang-Qun Xie, Junmei Wang. cbm, 159:106902, June 2023. [doi]

Phosphorylation at Ser289 Enhances the Oligomerization of Tau Repeat R2Viet Hoang Man, Xibing He, Fengyang Han, Lianjin Cai, Luxuan Wang, Taoyu Niu, Jingchen Zhai, Beihong Ji, Jie Gao, Junmei Wang. jcisd, 63(4):1351-1361, February 2023. [doi]

SPRF: A semantic Pseudo-relevance Feedback enhancement for information retrieval via ConceptNetMin Pan, Quanli Pei, Yu Liu, Teng Li, Ellen Anne Huang, Junmei Wang, Jimmy Xiangji Huang. kbs, 274:110602, 2023. [doi]

n-octanol-water partition coefficient (logP) for druglike molecules using MM-PBSA methodYuChen Sun, Tingjun Hou, Xibing He, Viet Hoang Man, Junmei Wang. jcc, 44(13):1300-1311, 2023. [doi]

Development and test of highly accurate endpoint free energy methods. 1: Evaluation of ABCG2 charge model on solvation free energy prediction and optimization of atom radii suitable for more accurate solvation free energy prediction by the PBSA methodYuChen Sun, Xibing He, Tingjun Hou, Lianjin Cai, Viet Hoang Man, Junmei Wang. jcc, 44(14):1334-1346, 2023. [doi]

Molecular Generation with Reduced Labeling through Constraint ArchitectureJike Wang, Yundian Zeng, Huiyong Sun, Junmei Wang, Xiaorui Wang, Ruofan Jin, Mingyang Wang, Xujun Zhang, Dong-Sheng Cao 0001, Xi Chen, Chang-Yu Hsieh, Tingjun Hou. jcisd, 63(11):3319-3327, June 2023. [doi]

Research on Asparagus Recognition Based on Deep LearningJie Yu, Chao Zhang 0015, Junmei Wang, Mingzhi Zhang, Xingguo Zhang, Xiaoqin Li. access, 11:117362-117367, 2023. [doi]

2022

A Concept Net-based semantic constraint method for query expansionZhichao Chen, Junmei Wang, Xiwei Yang. webi 2022: 906-913 [doi]

16-22 OligomerizationViet Hoang Man, Xibing He, Junmei Wang. jcisd, 62(16):3885-3895, 2022. [doi]

Preserving the Integrity of Empirical Force FieldsAsuka A. Orr, Suliman Sharif, Junmei Wang, Alexander D. MacKerell Jr.. jcisd, 62(16):3825-3831, 2022. [doi]

A probabilistic framework for integrating sentence-level semantics via BERT into pseudo-relevance feedbackMin Pan, Junmei Wang, Jimmy X. Huang, Angela J. Huang, Qi Chen, Jinguang Chen. ipm, 59(1):102734, 2022. [doi]

Effects of a New Media Data Interaction System on Teaching Efficiency in Vocational EducationJunmei Wang, Jin Liu. ijet, 17(7):163-174, April 2022. [doi]

ALipSol: An Attention-Driven Mixture-of-Experts Model for Lipophilicity and Solubility PredictionJialu Wu, Junmei Wang, Zhenxing Wu, Shengyu Zhang, Yafeng Deng, Yu Kang 0002, Dong-Sheng Cao 0001, Chang-Yu Hsieh, Tingjun Hou. jcisd, 62(23):5975-5987, 2022. [doi]

2021

Machine learning on ligand-residue interaction profiles to significantly improve binding affinity predictionBeihong Ji, Xibing He, Jingchen Zhai, Yuzhao Zhang, Viet Hoang Man, Junmei Wang. bib, 22(5), 2021. [doi]

Incorporating structural similarity into a scoring function to enhance the prediction of binding affinitiesBeihong Ji, Xibing He, Yuzhao Zhang, Jingchen Zhai, Viet Hoang Man, Shuhan Liu, Junmei Wang. jcheminf, 13(1):11, 2021. [doi]

Landscape of drug-resistance mutations in kinase regulatory hotspotsPora Kim, Hanyang Li, Junmei Wang, Zhongming Zhao. bib, 22(3), 2021. [doi]

ALeRT-COVID: Attentive Lockdown-awaRe Transfer Learning for Predicting COVID-19 Pandemics in Different CountriesYingxue Li, Wenxiao Jia, Junmei Wang, Jianying Guo, Qin Liu, Xiang Li 0013, Guotong Xie, Fei Wang 0001. jhir, 5(1):98-113, 2021. [doi]

Effects of ENSO on Climate and Garlic Yield in Main Garlic Production Areas of ChinaChenyang Li, Chao Zhang, Junmei Wang, Yan Zhang, Pingzeng Liu, Xin Liu, Lianlian Liu, Yuanlong Wang. smartiot 2021: 283-288 [doi]

The effect of COVID-19 on garlic pricesLiu Lianlian, Chao Zhang 0015, Junmei Wang, Zhang Qing, Pingzeng Liu, Liu Chenyang, Yifei Sun. smartiot 2021: 322-326 [doi]

VAD-MM/GBSA: A Variable Atomic Dielectric MM/GBSA Model for Improved Accuracy in Protein-Ligand Binding Free Energy CalculationsErcheng Wang, Weitao Fu, Dejun Jiang, Huiyong Sun, Junmei Wang, Xujun Zhang, Gaoqi Weng, Hui Liu, Peng Tao, Tingjun Hou. jcisd, 61(6):2844-2856, 2021. [doi]

In silico binding profile characterization of SARS-CoV-2 spike protein and its mutants bound to human ACE2 receptorYuzhao Zhang, Xibing He, Jingchen Zhai, Beihong Ji, Viet Hoang Man, Junmei Wang. bib, 22(6), 2021. [doi]

2020

How Well Does the Extended Linear Interaction Energy Method Perform in Accurate Binding Free Energy Calculations?Dongxiao Hao, Xibing He, Beihong Ji, Shengli Zhang, Junmei Wang. jcisd, 60(12):6624-6633, 2020. [doi]

Fast Identification of Possible Drug Treatment of Coronavirus Disease-19 (COVID-19) through Computational Drug Repurposing StudyJunmei Wang. jcisd, 60(6):3277-3286, 2020. [doi]

A Pseudo-relevance feedback framework combining relevance matching and semantic matching for information retrievalJunmei Wang, Min Pan, Tingting He, Xiang Huang, Xueyan Wang, Xinhui Tu. ipm, 57(6):102342, 2020. [doi]

Development and Evaluation of MM/GBSA Based on a Variable Dielectric GB Model for Predicting Protein-Ligand Binding AffinitiesErcheng Wang, Hui Liu, Junmei Wang, Gaoqi Weng, Huiyong Sun, Zhe Wang, Yu Kang, Tingjun Hou. jcisd, 60(11):5353-5365, 2020. [doi]

A Multi-directional Approach for Missing Value Estimation in Multivariate Time Series Clinical DataXiao Xu, Xiaoshuang Liu, Yanni Kang, Xian Xu, Junmei Wang, Yuyao Sun, Quanhe Chen, Xiaoyu Jia, Xinyue Ma, Xiaoyan Meng, Xiang Li 0013, Guotong Xie. jhir, 4(4):365-382, 2020. [doi]

2019

TASP: A Time-Phased Model for Sepsis PredictionXiang Li 0013, Yanni Kang, Xiaoyu Jia, Junmei Wang, Guotong Xie. cinc 2019: 1-4 [doi]

Significantly different effects of tetrahydroberberrubine enantiomers on dopamine D1/D2 receptors revealed by experimental study and integrated in silico simulationHaixia Ge, Yuemin Bian, Xibing He, Xiang-Qun Xie, Junmei Wang. jcamd, 33(4):447-459, 2019. [doi]

Calculate protein-ligand binding affinities with the extended linear interaction energy method: application on the Cathepsin S set in the D3R Grand Challenge 3Xibing He, Viet H. Man, Beihong Ji, Xiang-Qun Xie, Junmei Wang. jcamd, 33(1):105-117, 2019. [doi]

CCNU_IRGroup @ TREC 2019 Deep Learning TrackHao Hu, Junmei Wang, Xinhui Tu, Tingting He. trec 2019: [doi]

Input-Output Analysis of Chinese National Agricultural Science and Technology ParkAnqi Huang, Chao Zhang, Pingzeng Liu, Junmei Wang, Wanming Ren, Yong Zheng. icccsec 2019: 509-523 [doi]

Development and Testing of Druglike Screening LibrariesJunmei Wang, Yubin Ge, Xiang-Qun Xie. jcisd, 59(1):53-65, 2019. [doi]

Estimating Missing Values in Multivariate-Time-Series Clinical Data using Gradient Boosting Tree on Temporal and Cross-variable FeaturesXiao Xu, Junmei Wang, Xian Xu, Yuyao Sun, Quanhe Chen, Xiang Li 0003, Guotong Xie. ichi 2019: 1-3 [doi]

2018

The Traceability Information Management Platform of Duck Product Industry ChainLining Liu, Pingzeng Liu, Wanming Ren, Yong Zheng, Chao Zhang, Junmei Wang. icccsec 2018: 144-153 [doi]

Molecular Dynamics Simulations Revealed the Regulation of Ligands to the Interactions between Androgen Receptor and Its CoactivatorNa Liu, Wenfang Zhou, Yue Guo, Junmei Wang, Weitao Fu, Huiyong Sun, Dan Li, Mojie Duan, Tingjun Hou. jcisd, 58(8):1652-1661, 2018. [doi]

Factorial-Quality Scalar and an Extension of ELECTRE in Intuitionistic Fuzzy SetsGuohua Qu, Weihua Qu, Junmei Wang, Haisheng Zhou, Zengliang Liu. ijitdm, 17(1):183-208, 2018. [doi]

Cheminformatic Insight into the Differences between Terrestrial and Marine Originated Natural ProductsJun Shang, Ben Hu, Junmei Wang, Feng Zhu 0004, Yu Kang, Dan Li 0013, Huiyong Sun, De-Xin Kong, Tingjun Hou. jcisd, 58(6):1182-1193, 2018. [doi]

Prediction of Garlic Price Based on ARIMA ModelBaojia Wang, Pingzeng Liu, Chao Zhang, Junmei Wang, Liu Peng. icccsec 2018: 731-739 [doi]

Safety Traceability System of Livestock and Poultry Industrial ChainXueru Yu, Pingzeng Liu, Wanming Ren, Chao Zhang, Junmei Wang, Yong Zheng. icccsec 2018: 3-12 [doi]

The Internet of Things and Big Data in the Submarine Cable Release Process of Finite Element Simulation and Matlab SimulationChao Zhang, Junmei Wang. icccsec 2018: 133-143 [doi]

Traffic Accident Time Series AnalysisChao Zhang, Junmei Wang, Pingzeng Liu, Wanming Ren, Weijie Chen, Yanyan Wang. icccsec 2018: 344-356 [doi]

Based on Data Analysis and JC Retrofit Scheme of Dam Risk Function and the Simulation ExperimentChao Zhang, Lei Zhang, Junmei Wang, Pingzeng Liu, Yong Zheng, Wanming Ren. icccsec 2018: 452-463 [doi]

2014

P-loop Conformation Governed Crizotinib Resistance in G2032R-Mutated ROS1 Tyrosine Kinase: Clues from Free Energy LandscapeHuiyong Sun, Youyong Li, sheng Tian, Junmei Wang, Tingjun Hou. ploscb, 10(7), 2014. [doi]

MORT: a powerful foundational library for computational biology and CADDQian Zhang, Wei Zhang, Youyong Li, Junmei Wang, Jian Zhang, Tingjun Hou. jcheminf, 6(1):36, 2014. [doi]

2013

Modeling Compound-Target Interaction Network of Traditional Chinese Medicines for Type II Diabetes Mellitus: Insight for Polypharmacology and Drug Designsheng Tian, Youyong Li, Dan Li, Xiaojie Xu, Junmei Wang, Qian Zhang, Tingjun Hou. jcisd, 53(7):1787-1803, 2013. [doi]

Drug-likeness analysis of traditional Chinese medicines: 2. Characterization of scaffold architectures for drug-like compounds, non-drug-like compounds, and natural compounds from traditional Chinese medicinessheng Tian, Youyong Li, Junmei Wang, Xiaojie Xu, Lei Xu, Xiaohong Wang, Lei Chen, Tingjun Hou. jcheminf, 5:5, 2013. [doi]

Accelerated Conformational Entropy Calculations Using Graphic Processing UnitsQian Zhang, Junmei Wang, Ginés D. Guerrero, José M. Cecilia, José M. García 0001, Youyong Li, Horacio Emilio Pérez Sánchez, Tingjun Hou. jcisd, 53(8):2057-2064, 2013. [doi]

A GPU based Conformational Entropy Calculation MethodQian Zhang, José M. García, Junmei Wang, Tingjun Hou, Horacio Emilio Pérez Sánchez. iwbbio 2013: 735-743 [doi]

2012

ADMET Evaluation in Drug Discovery. 11. PharmacoKinetics Knowledge Base (PKKB): A Comprehensive Database of Pharmacokinetic and Toxic Properties for DrugsDongyue Cao, Junmei Wang, Rui Zhou, Youyong Li, Huidong Yu, Tingjun Hou. jcisd, 52(5):1132-1137, 2012. [doi]

Drug-likeness analysis of traditional Chinese medicines: 1. property distributions of drug-like compounds, non-drug-like compounds and natural compounds from traditional Chinese medicinesMingyun Shen, sheng Tian, Youyong Li, Qian Li, Xiaojie Xu, Junmei Wang, Tingjun Hou. jcheminf, 4:31, 2012. [doi]

Develop and Test a Solvent Accessible Surface Area-Based Model in Conformational Entropy CalculationsJunmei Wang, Tingjun Hou. jcisd, 52(5):1199-1212, 2012. [doi]

A rule-based algorithm for automatic bond type perceptionQian Zhang, Wei Zhang 0019, Youyong Li, Junmei Wang, Liling Zhang, Tingjun Hou. jcheminf, 4:26, 2012. [doi]

2011

Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics SimulationsTingjun Hou, Junmei Wang, Youyong Li, Wei Wang 0051. jcisd, 51(1):69-82, 2011. [doi]

Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from dockingTingjun Hou, Junmei Wang, Youyong Li, Wei Wang. jcc, 32(5):866-877, 2011. [doi]

Application of molecular dynamics simulations in molecular property prediction II: Diffusion coefficientJunmei Wang, Tingjun Hou. jcc, 32(16):3505-3519, 2011. [doi]

2010

Drug and Drug Candidate Building Block AnalysisJunmei Wang, Tingjun Hou. jcisd, 50(1):55-67, 2010. [doi]

2009

Aqueous Solubility Prediction Based on Weighted Atom Type Counts and Solvent Accessible Surface AreasJunmei Wang, Tingjun Hou, Xiaojie Xu. jcisd, 49(3):571-581, 2009. [doi]

2007

GPCR Structure-Based Virtual Screening Approach for CB2 Antagonist SearchJian-zhong Chen, Junmei Wang, Xiang-Qun Xie. jcisd, 47(4):1626-1637, 2007. [doi]

ADME Evaluation in Drug Discovery, 8. The Prediction of Human Intestinal Absorption by a Support Vector MachineTingjun Hou, Junmei Wang, Youyong Li. jcisd, 47(6):2408-2415, 2007. [doi]

ADME Evaluation in Drug Discovery, 6. Can Oral Bioavailability in Humans Be Effectively Predicted by Simple Molecular Property-Based Rules?Tingjun Hou, Junmei Wang, Wei Zhang 0019, Xiaojie Xu. jcisd, 47(2):460-463, 2007. [doi]

ADME Evaluation in Drug Discovery, 7. Prediction of Oral Absorption by Correlation and ClassificationTingjun Hou, Junmei Wang, Wei Zhang 0019, Xiaojie Xu. jcisd, 47(1):208-218, 2007. [doi]

Development of Reliable Aqueous Solubility Models and Their Application in Druglike AnalysisJunmei Wang, George Krudy, Tingjun Hou, Wei Zhang, George Holland, Xiaojie Xu. jcisd, 47(4):1395-1404, 2007. [doi]

2006

Genetic Algorithm-Optimized QSPR Models for Bioavailability, Protein Binding, and Urinary ExcretionJunmei Wang, George Krudy, Xiang-Qun Xie, Chengde Wu, George Holland. jcisd, 46(6):2674-2683, 2006. [doi]

A Partition-Based Approach to Graph MiningJunmei Wang, Wynne Hsu, Mong-Li Lee, Chang Sheng. icde 2006: 74 [doi]

2005

2004

2003

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculationsYong Duan, Chun Wu, Shibasish Chowdhury, Mathew C. Lee, Guoming Xiong, Wei Zhang, Rong Yang, Piotr Cieplak, Ray Luo, Taisung Lee, James W. Caldwell, Junmei Wang, Peter A. Kollman. jcc, 24(16):1999-2012, 2003. [doi]

2001

Automatic parameterization of force field by systematic search and genetic algorithmsJunmei Wang, Peter A. Kollman. jcc, 22(12):1219-1228, 2001. [doi]

2000

How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?Junmei Wang, Piotr Cieplak, Peter A. Kollman. jcc, 21(12):1049-1074, 2000. [doi]

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