Kenneth P. Nephew - researchr alias

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Viewing Publication 1 - 18 from 18

2016

Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell linesHeejoon Chae, Sangseon Lee, Kenneth P. Nephew, Sun Kim. bmcsb, 10(4):433-443, 2016. [doi]

2015

BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing dataHeejoon Chae, SungMin Rhee, Kenneth P. Nephew, Sun Kim. bioinformatics, 31(2):265-267, 2015. [doi]

2013

Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking SequencesJaehyun An, Kwangsoo Kim, SungMin Rhee, Heejoon Chae, Kenneth P. Nephew, Sun Kim. jbcb, 11(3), 2013. [doi]

2012

A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promotersYoungik Yang, Kenneth P. Nephew, Sun Kim. bmcbi, 13(S-3), 2012. [doi]

A dynamic time order network for time-series gene expression data analysisPengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li. bmcsb, 6(S-3), 2012. [doi]

2011

BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated AnalysisHyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew, Sun Kim. bibm 2011: 494-499 [doi]

Transitioning BioVLab cloud workbench to a science gatewaySuresh Marru, Heejoon Chae, Patanachai Tangchaisin, Sun Kim, Marlon E. Pierce, Kenneth P. Nephew. tg 2011: [doi]

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancerChangyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li. bmcsb, 5:67, 2011. [doi]

Empirical bayes model comparisons for differential methylation analysisMingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li. gensips 2011: 9-12 [doi]

An ERα/modulator regulatory network in the breast cancer cellsHeng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li. gensips 2011: 5-8 [doi]

2009

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expressionSeungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew. nar, 37(Web-Server-Issue):356-362, 2009. [doi]

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modulesHuaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri. bmcsb, 3:73, 2009. [doi]

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistanceFuxiao Xin, Meng Li, Curtis Balch, Michael Thomson, Meiyun Fan, Yunlong Liu, Scott M. Hammond, Sun Kim, Kenneth P. Nephew. bioinformatics, 25(4):430-434, 2009. [doi]

2008

2007

Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression DataGuohua Wang, Xin Wang, Lang Li, Kenneth P. Nephew, Howard J. Edenberg, Feng Zhou, Yunlong Liu. psb 2007: 657-663

2006

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alphaLang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew. bioinformatics, 22(18):2210-2216, 2006. [doi]

2005

Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray SystemLang Li, Huidong Shi, Constantin Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew. jcb, 12(3):370-390, 2005. [doi]

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