Matthew E. Monroe - researchr alias

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Viewing Publication 1 - 15 from 15

2019

Lipid Mini-On: mining and ontology tool for enrichment analysis of lipidomic dataGeremy Clair, Sarah Reehl, Kelly G. Stratton, Matthew E. Monroe, Malak M. Tfaily, Charles Ansong, Jennifer E. Kyle. bioinformatics, 35(21):4507-4508, 2019. [doi]

2017

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data associationJian Ma, Cameron P. Casey, Xueyun Zheng, Yehia M. Ibrahim, Christopher S. Wilkins, Ryan S. Renslow, Dennis G. Thomas, Samuel H. Payne, Matthew E. Monroe, Richard D. Smith, Justin G. Teeguarden, Erin S. Baker, Thomas O. Metz. bioinformatics, 33(17):2715-2722, 2017. [doi]

2015

Correcting systematic bias and instrument measurement drift with mzRefineryBryson C. Gibbons, Matthew Chambers, Matthew E. Monroe, David L. Tabb, Samuel H. Payne. bioinformatics, 31(23):3838-3840, 2015. [doi]

2013

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasetsKevin L. Crowell, Gordon W. Slysz, Erin S. Baker, Brian L. LaMarche, Matthew E. Monroe, Yehia M. Ibrahim, Samuel H. Payne, Gordon A. Anderson, Richard D. Smith. bioinformatics, 29(21):2804-2805, 2013. [doi]

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data PublicationsEugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl. bigdata, 1(4):196-201, 2013. [doi]

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysisBrian L. LaMarche, Kevin L. Crowell, Navdeep Jaitly, Vladislav A. Petyuk, Anuj R. Shah, Ashoka D. Polpitiya, John D. Sandoval, Gary R. Kiebel, Matthew E. Monroe, Stephen J. Callister, Thomas O. Metz, Gordon A. Anderson, Richard D. Smith. bmcbi, 14:49, 2013. [doi]

Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification RatesDong Wang, Surendra Dasari, Matthew Chambers, Jerry D. Holman, Kan Chen, Daniel C. Liebler, Daniel J. Orton, Samuel O. Purvine, Matthew E. Monroe, Chang Y. Chung, Kristie L. Rose, David L. Tabb. gpb, 11(2):86-95, 2013. [doi]

2011

Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cyclesUma K. Aryal, Jana Stöckel, Ravi K. Krovvidi, Marina A. Gritsenko, Matthew E. Monroe, Ronald J. Moore, David W. Koppenaal, Richard D. Smith, Himadri B. Pakrasi, Jon M. Jacobs. bmcsb, 5:194, 2011. [doi]

2010

2009

An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass SpectrometryAnuj R. Shah, Navdeep Jaitly, Nino Zuljevic, Matthew E. Monroe, Andrei Liyu, Ashoka D. Polpitiya, Joshua N. Adkins, Mikhail E. Belov, Gordon A. Anderson, Richard D. Smith, Ian Gorton. eScience 2009: 88-93 [doi]

2008

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectraAnoop M. Mayampurath, Navdeep Jaitly, Samuel O. Purvine, Matthew E. Monroe, Kenneth J. Auberry, Joshua N. Adkins, Richard D. Smith. bioinformatics, 24(7):1021-1023, 2008. [doi]

MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) featuresMatthew E. Monroe, Jason L. Shaw, Don Simone Daly, Joshua N. Adkins, Richard D. Smith. CANDC, 32(3):215-217, 2008. [doi]

2007

VIPER: an advanced software package to support high-throughput LC-MS peptide identificationMatthew E. Monroe, Nikola Tolic, Navdeep Jaitly, Jason L. Shaw, Joshua N. Adkins, Richard D. Smith. bioinformatics, 23(15):2021-2023, 2007. [doi]

2004

Estimating Probabilities of Peptide Assignments to LC-FTICR-MS ObservationsKevin K. Anderson, Matthew E. Monroe, Don Simone Daly. metmbs 2004: 151-156

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