Joshua N. Adkins - researchr alias

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Viewing Publication 1 - 20 from 20

2021

familiesAhmed A. Zayed, Dominik Lücking, Mohamed Mohssen, Dylan Cronin, Ben Bolduc, Ann C. Gregory, Katherine R. Hargreaves, Paul D. Piehowski, Richard Allen White III, Eric L. Huang, Joshua N. Adkins, Simon Roux, Cristina Moraru, Matthew B. Sullivan. bioinformatics, 37(22):4202-4208, November 2021. [doi]

2019

Unified feature association networks through integration of transcriptomic and proteomic dataRyan Mcclure, Jason P. Wendler, Joshua N. Adkins, Jesica Swanstrom, Ralph S. Baric, Brooke L. Deatherage Kaiser, Kristie L. Oxford, Katrina M. Waters, Jason E. McDermott. ploscb, 15(9), 2019. [doi]

2013

3E: condition-specific models of cellular metabolism developed from metabolomics and expression dataBrian J. Schmidt, Ali Ebrahim, Thomas O. Metz, Joshua N. Adkins, Bernhard Ø. Palsson, Daniel R. Hyduke. bioinformatics, 29(22):2900-2908, 2013. [doi]

2011

An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92Pep Charusanti, Sadhana Chauhan, Kathleen Mcateer, Joshua A. Lerman, Daniel R. Hyduke, Vladimir L. Motin, Charles Ansong, Joshua N. Adkins, Bernhard O. Palsson. bmcsb, 5:163, 2011. [doi]

Systems analysis of multiple regulator perturbations allows discovery of virulence factors in SalmonellaHyunjin Yoon, Charles Ansong, Jason E. McDermott, Marina Gritsenko, Richard D. Smith, Fred Heffron, Joshua N. Adkins. bmcsb, 5:100, 2011. [doi]

2010

2009

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry dataNavdeep Jaitly, Anoop M. Mayampurath, Kyle Littlefield, Joshua N. Adkins, Gordon A. Anderson, Richard D. Smith. bmcbi, 10, 2009. [doi]

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decompositionYuliya V. Karpievitch, Thomas Taverner, Joshua N. Adkins, Stephen J. Callister, Gordon A. Anderson, Richard D. Smith, Alan R. Dabney. bioinformatics, 25(19):2573-2580, 2009. [doi]

A statistical framework for protein quantitation in bottom-up MS-based proteomicsYuliya V. Karpievitch, Jeff Stanley, Thomas Taverner, Jianhua Huang, Joshua N. Adkins, Charles Ansong, Fred Heffron, Thomas O. Metz, Wei-Jun Qian, Hyunjin Yoon, Richard D. Smith, Alan R. Dabney. bioinformatics, 25(16):2028-2034, 2009. [doi]

An Architecture for Real Time Data Acquisition and Online Signal Processing for High Throughput Tandem Mass SpectrometryAnuj R. Shah, Navdeep Jaitly, Nino Zuljevic, Matthew E. Monroe, Andrei Liyu, Ashoka D. Polpitiya, Joshua N. Adkins, Mikhail E. Belov, Gordon A. Anderson, Richard D. Smith, Ian Gorton. eScience 2009: 88-93 [doi]

2008

2007

VIPER: an advanced software package to support high-throughput LC-MS peptide identificationMatthew E. Monroe, Nikola Tolic, Navdeep Jaitly, Jason L. Shaw, Joshua N. Adkins, Richard D. Smith. bioinformatics, 23(15):2021-2023, 2007. [doi]

PQuad - a visual analysis platform for proteomic data exploration of microbial organismsBobbie-Jo M. Webb-Robertson, Elena S. Peterson, Mudita Singhal, Kyle R. Klicker, Christopher S. Oehmen, Joshua N. Adkins, Susan L. Havre. bioinformatics, 23(13):1705-1707, 2007. [doi]

2006

2004

Facilitating interpretation of mass spectrometry based proteomics dataJoel C. Hunter, Joshua N. Adkins, Joel G. Pounds, John H. Miller. metmbs 2004: 471-477

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